commit: 1a1e9755d0985ab7f3e9107be9125aead76d1b7c Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Jan 29 15:29:09 2018 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Jan 29 15:29:09 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1a1e9755
sci-biology/chiron: new package Will need more work to get CPU- and GPU-based features enabled at once, or will need two separate installs? Package-Manager: Portage-2.3.20, Repoman-2.3.6 sci-biology/chiron/chiron-9999.ebuild | 22 ++++++++++++++++++++++ sci-biology/chiron/metadata.xml | 12 ++++++++++++ 2 files changed, 34 insertions(+) diff --git a/sci-biology/chiron/chiron-9999.ebuild b/sci-biology/chiron/chiron-9999.ebuild new file mode 100644 index 000000000..daf1c15b9 --- /dev/null +++ b/sci-biology/chiron/chiron-9999.ebuild @@ -0,0 +1,22 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 pypy ) + +inherit distutils-r1 eutils git-r3 + +DESCRIPTION="Basecaller for OxfordNanopore data using deep learning" +HOMEPAGE="https://github.com/haotianteng/chiron + https://www.biorxiv.org/content/early/2017/09/12/179531"; +EGIT_REPO_URI="https://github.com/haotianteng/chiron"; + +LICENSE="MPL-2.0" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + dev-python/h5py" diff --git a/sci-biology/chiron/metadata.xml b/sci-biology/chiron/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/chiron/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
