commit: 7d318bbea490d8786ab6336b355529b08df8ee38 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Jul 20 20:14:43 2017 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Jul 28 20:05:19 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7d318bbe
sci-biology/bcftools: version bump This should be kept unmasked as it uses bundled static lib of htslib-1.5 so practically avoid dependency on sci-libs/htslib-1.5. Package-Manager: Portage-2.3.6, Repoman-2.3.2 sci-biology/bcftools/bcftools-1.5.ebuild | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/sci-biology/bcftools/bcftools-1.5.ebuild b/sci-biology/bcftools/bcftools-1.5.ebuild new file mode 100644 index 000000000..b194609b6 --- /dev/null +++ b/sci-biology/bcftools/bcftools-1.5.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit toolchain-funcs + +DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" +HOMEPAGE="http://www.htslib.org"; +SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2"; + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries +DEPEND="dev-lang/perl" +RDEPEND="${DEPEND}" + +src_prepare(){ + sed -e "s@gcc@$(tc-getCC)@" \ + -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ + -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die + + sed -e "s@gcc@$(tc-getCC)@" \ + -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ + -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die +}
