commit: 8626e7cf15de4a26857f95608e87afdc5a18f947 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Apr 20 17:05:20 2017 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Apr 20 17:05:20 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8626e7cf
sci-biology/oncotator: new package Package-Manager: Portage-2.3.5, Repoman-2.3.2 sci-biology/oncotator/metadata.xml | 12 +++++++++ sci-biology/oncotator/oncotator-1.9.2.0.ebuild | 34 ++++++++++++++++++++++++++ 2 files changed, 46 insertions(+) diff --git a/sci-biology/oncotator/metadata.xml b/sci-biology/oncotator/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/sci-biology/oncotator/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/oncotator/oncotator-1.9.2.0.ebuild b/sci-biology/oncotator/oncotator-1.9.2.0.ebuild new file mode 100644 index 000000000..aa9b07ba9 --- /dev/null +++ b/sci-biology/oncotator/oncotator-1.9.2.0.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_5 ) +inherit distutils-r1 + +DESCRIPTION="Annotate genetic variants in VCF" +HOMEPAGE="https://github.com/broadinstitute/oncotator"; +SRC_URI="https://github.com/broadinstitute/oncotator/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="oncotator" +SLOT="0" +KEYWORDS="" # breaks silently during install because of python syntax errors +IUSE="" + +DEPEND=" + >=sci-biology/pysam-0.9.0 + >=dev-python/bcbio-gff-0.6.2 + >=dev-python/pyvcf-0.6.8 + >=dev-python/pandas-0.18.0 + >=sci-biology/biopython-1.66 + >=dev-python/numpy-1.11.0 + >=dev-python/cython-0.24 + >=dev-python/shove-0.6.6 + >=dev-python/sqlalchemy-1.0.12 + >=dev-python/nose-1.3.7 + >=dev-python/python-memcached-1.57 + >=dev-python/natsort-4.0.4 + >=dev-python/more-itertools-2.2 + >=dev-python/enum34-1.1.2 + dev-python/ngslib" +RDEPEND="${DEPEND}"
