commit: dd7e564441676f8fbce36c262cb15aa865f5b545 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sat Apr 15 00:11:55 2017 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sat Apr 15 00:11:55 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=dd7e5644
sci-biology/flexbar: version bump, added KEYWORDS We still could filter away '-Wl,-O1' from CXXFLAGS. Package-Manager: Portage-2.3.5, Repoman-2.3.2 sci-biology/flexbar/flexbar-3.0.0.ebuild | 41 ++++++++++++++++++++++++++++++++ 1 file changed, 41 insertions(+) diff --git a/sci-biology/flexbar/flexbar-3.0.0.ebuild b/sci-biology/flexbar/flexbar-3.0.0.ebuild new file mode 100644 index 000000000..65f5dd077 --- /dev/null +++ b/sci-biology/flexbar/flexbar-3.0.0.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit cmake-utils + +DESCRIPTION="Barcode, MID tag and adapter sequence removal" +HOMEPAGE="https://github.com/seqan/flexbar"; +SRC_URI="https://github.com/seqan/flexbar/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +CDEPEND=" + dev-cpp/tbb + >=sci-biology/seqan-2.1.1:0 + sys-libs/zlib + app-arch/bzip2" +DEPEND="${CDEPEND}" +RDEPEND="${CDEPEND}" + +# TODO: need to call 'pkg-config --cflags seqan-2.2' and pass it down +src_configure() { + local CPPFLAGS=${CPPFLAGS} + append-cppflags `pkg-config --cflags seqan-2.2` + local CXXFLAGS="${CXXFLAGS}" + append-cxxflags "-std=c++14" + cmake-utils_src_configure +} + +# SeqAn requires C++14! You must compile your application with -std=c++14, -std=gnu++14 or -std=c++1y +# https://github.com/seqan/flexbar/issues/8 + +src_install(){ + elog `pwd` + dobin ../"${P}"_build/flexbar + dodoc ../"${P}"/README.md +}
