commit: b0176e52f19303e32d2797d6b41273a70dfb2b2c Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Mar 31 21:10:09 2017 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Mar 31 21:10:09 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b0176e52
sci-biology/deeptools: add new package Package-Manager: Portage-2.3.5, Repoman-2.3.1 sci-biology/deeptools/deeptools-2.5.0.ebuild | 32 ++++++++++++++++++++++++++++ sci-biology/deeptools/deeptools-9999.ebuild | 32 ++++++++++++++++++++++++++++ sci-biology/deeptools/metadata.xml | 12 +++++++++++ 3 files changed, 76 insertions(+) diff --git a/sci-biology/deeptools/deeptools-2.5.0.ebuild b/sci-biology/deeptools/deeptools-2.5.0.ebuild new file mode 100644 index 000000000..e69672942 --- /dev/null +++ b/sci-biology/deeptools/deeptools-2.5.0.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_5 ) + +inherit distutils-r1 + +[ "$PV" == "9999" ] && inherit git-2 + +DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig" +HOMEPAGE="https://github.com/fidelram/deepTools"; +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/fidelram/deepTools"; + KEYWORDS="" +else + SRC_URI="https://github.com/fidelram/deepTools/archive/2.5.0.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +DEPEND=">=dev-python/numpy-1.8.0 + >=sci-libs/scipy-0.17.0 + >=dev-python/py2bit-0.1.0 + >=dev-python/pyBigWig-0.2.1 + >=sci-biology/pysam-0.8 + >=dev-python/matplotlib-1.4.0" +RDEPEND="${DEPEND}" diff --git a/sci-biology/deeptools/deeptools-9999.ebuild b/sci-biology/deeptools/deeptools-9999.ebuild new file mode 100644 index 000000000..a2c1fcfb9 --- /dev/null +++ b/sci-biology/deeptools/deeptools-9999.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python2_7 python3_5 ) + +inherit distutils-r1 + +[ "$PV" == "9999" ] && inherit git-2 + +DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig" +HOMEPAGE="https://github.com/fidelram/deepTools"; +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/fidelram/deepTools"; + KEYWORDS="" +else + SRC_URI="https://github.com/fidelram/deepTools/archive/2.5.0.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +DEPEND=">=dev-python/numpy-1.8.0 + >=sci-libs/scipy-0.17.0 + >=dev-python/py2bit-0.1.0 + >=dev-python/pyBigWig-0.2.1 + >=sci-biology/pysam-0.8 + >=dev-python/matplotlib-1.4.0" +RDEPEND="${DEPEND}" diff --git a/sci-biology/deeptools/metadata.xml b/sci-biology/deeptools/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/sci-biology/deeptools/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
