commit: b0f5561f3b3b53e33778bc22d9ad4792fb593ca3 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Dec 7 13:07:25 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Dec 7 13:07:25 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b0f5561f
sci-biology/annovar: new package Package-Manager: portage-2.3.2 sci-biology/annovar/annovar-20160201.ebuild | 38 +++++++++++++++++++++++++++++ sci-biology/annovar/metadata.xml | 12 +++++++++ 2 files changed, 50 insertions(+) diff --git a/sci-biology/annovar/annovar-20160201.ebuild b/sci-biology/annovar/annovar-20160201.ebuild new file mode 100644 index 0000000..79ddbd1 --- /dev/null +++ b/sci-biology/annovar/annovar-20160201.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +DESCRIPTION="Annotate variation data in input VCF files" +HOMEPAGE="http://annovar.openbioinformatics.org"; +SRC_URI="annovar-20160201.tar.gz + annovar-20160201_table_annovar.pl" + +LICENSE="annovar_personal_only" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="" +RDEPEND="dev-lang/perl + ${DEPEND}" + +RESTRICT="fetch" + +S="${WORKDIR}"/"${PN}" + +pkg_nofetch() { + einfo "Please visit ${HOMEPAGE} and obtain the file" + einfo "\"${P}.tar.gz\" and place it in ${DISTDIR}." + einfo "Also fetch an updated version of http://www.openbioinformatics.org/annovar/download/table_annovar.pl"; + einfo "and place it into ${DISTDIR} as ${P}__table_annovar.pl." +} + +src_install(){ + dobin *.pl + # install a "patch" from table_annovar.pl + newbin "${DISTDIR}"/${P}_table_annovar.pl table_annovar.pl + insinto /usr/share/"${PN}" + doins -r example humandb +} diff --git a/sci-biology/annovar/metadata.xml b/sci-biology/annovar/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/annovar/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
