[gentoo-commits] proj/sci:master commit in: sci-biology/SnpEff/

[Martin Mokrejs]

commit:     5fb831e8c3bcf4b192b96dcf018a558a86bd1581
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Dec  7 10:14:58 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Dec  7 10:14:58 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5fb831e8

sci-biology/SnpEff: fix installation on PREFIX

Package-Manager: portage-2.3.2

 sci-biology/SnpEff/SnpEff-4.3g.ebuild | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/sci-biology/SnpEff/SnpEff-4.3g.ebuild 
b/sci-biology/SnpEff/SnpEff-4.3g.ebuild
index f817588..fb11894 100644
--- a/sci-biology/SnpEff/SnpEff-4.3g.ebuild
+++ b/sci-biology/SnpEff/SnpEff-4.3g.ebuild
@@ -36,22 +36,22 @@ S="${WORKDIR}"
 
 src_install(){
        cd .. || die
-       mkdir -p "${D}"/usr/share || die
+       mkdir -p "${ED}"/usr/share || die
        # but portage does not install the .* files and subdirs, grr!
        unzip \
-               "${DISTDIR}"/snpEff_v"${MY_PV}"_core.zip -d "${D}"/usr/share \
+               "${DISTDIR}"/snpEff_v"${MY_PV}"_core.zip -d "${ED}"/usr/share \
                || die "failed to unzip ${DISTDIR}/snpEff_v${MY_PV}_core.zip"
        sed \
-               -e 's#$HOME/tools/picard/#/usr/share/picard/lib/#' \
+               -e "s#$HOME/tools/picard/#${ED}/usr/share/picard/lib/#" \
                -i "${ED}"/usr/share/snpEff/scripts/annotate_demo_GATK.sh || die
        sed \
-               -e 's#$HOME/tools/gatk/#/usr/share/gatk/lib/#' \
+               -e "s#$HOME/tools/gatk/#${ED}/usr/share/gatk/lib/#" \
                -i "${ED}"/usr/share/snpEff/scripts/annotate_demo_GATK.sh || die
        sed \
-               -e 's#$HOME/snpEff/#/usr/share/snpEff/#' \
+               -e "s#$HOME/snpEff/#${ED}/usr/share/snpEff/#" \
                -i "${ED}"/usr/share/snpEff/scripts/annotate_demo_GATK.sh || die
        sed \
-       -e 's#$HOME/snpEff/snpEff.config#/usr/share/snpEff/snpEff.config#' \
+       -e "s#$HOME/snpEff/snpEff.config#${ED}/usr/share/snpEff/snpEff.config#" 
\
        -i "${ED}"/usr/share/snpEff/scripts/annotate_demo_GATK.sh || die
 }