commit: 38ef4fac3f1c8bfb5044571b268200a0a1488969 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Dec 2 22:52:44 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Dec 2 22:52:44 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=38ef4fac
dev-perl/Bio-EnsEMBL: new package to provide EnsEMBL Perl API This is needed by sci-biology/ensembl-tools, do not miss the official installation procedure at http://www.ensembl.org/info/docs/api/api_installation.html Package-Manager: portage-2.3.2 dev-perl/Bio-EnsEMBL/Bio-EnsEMBL-9999.ebuild | 35 ++++++++++++++++++++++++++++ dev-perl/Bio-EnsEMBL/metadata.xml | 12 ++++++++++ 2 files changed, 47 insertions(+) diff --git a/dev-perl/Bio-EnsEMBL/Bio-EnsEMBL-9999.ebuild b/dev-perl/Bio-EnsEMBL/Bio-EnsEMBL-9999.ebuild new file mode 100644 index 0000000..73e3a47 --- /dev/null +++ b/dev-perl/Bio-EnsEMBL/Bio-EnsEMBL-9999.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +MODULE_AUTHOR="" +inherit perl-module + +DESCRIPTION="EnsEMBL Perl API aka ensembl-api exposing Bio::EnsEMBL::Registry" +SRC_URI="ftp://ftp.ensembl.org/pub/ensembl-api.tar.gz"; + +#LICENSE="|| ( Artistic GPL-1+ )" +SLOT="0" +KEYWORDS="" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_install(){ + perl_set_version + insinto "${VENDOR_LIB}" # do not add "${PN}" so the the PERL path starts with Bio/ + find . -name t | xargs rm -rf || die + find . -name test.pl | xargs rm -f || die + find . -name \*.example | xargs rm -f || die + find . -name \*.json | xargs rm -f || die + find . -name README* | xargs rm -rf || die + find . -name \*.conf | xargs rm -f || die + find . -name travisci | xargs rm -rf || die + find . -name sql | xargs rm -rf || die + find . -name modules | while read d; do pushd "$d"; doins -r *; popd; done || die +} diff --git a/dev-perl/Bio-EnsEMBL/metadata.xml b/dev-perl/Bio-EnsEMBL/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/dev-perl/Bio-EnsEMBL/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
