commit: 8ee85fd0668f17101b4dd8ad1b35ee0194521184 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Sat Sep 24 15:03:46 2016 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Sat Sep 24 19:02:07 2016 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8ee85fd0
sci-libs/libmems: Allow for compiling with GCC 6 Gentoo-bug: 594814 * Patch taken from Debian * Add sub-slot operator for dev-libs/boost * Delete .la files Package-Manager: portage-2.3.1 .../libmems/files/libmems-1.6_p1-fix-c++14.patch | 18 +++++++++++++++ ...s-1.6_p1-r1.ebuild => libmems-1.6_p1-r2.ebuild} | 27 ++++++++++++++++------ 2 files changed, 38 insertions(+), 7 deletions(-) diff --git a/sci-libs/libmems/files/libmems-1.6_p1-fix-c++14.patch b/sci-libs/libmems/files/libmems-1.6_p1-fix-c++14.patch new file mode 100644 index 00000000..bde8efe --- /dev/null +++ b/sci-libs/libmems/files/libmems-1.6_p1-fix-c++14.patch @@ -0,0 +1,18 @@ +Description: Correct compilation with g++-6 +Author: Gert Wollny <[email protected]> +Bug-Debian: https://bugs.debian.org/811870 +Forwarded: yes +Bug: https://sourceforge.net/p/mauve/bugs/46/ +Last-Update: 2016-06-30 + +--- a/libMems/ProgressiveAligner.cpp ++++ b/libMems/ProgressiveAligner.cpp +@@ -1599,7 +1599,7 @@ + c.SetLeftEnd(child_1, ancestral_matches[mI]->LeftEnd(1)); + c.SetOrientation(child_1, ancestral_matches[mI]->Orientation(1)); + c.SetLength(ancestral_matches[mI]->Length(1), child_1); +- cga_list.push_back(make_tuple(c.Copy(), &bs[mI], ancestral_matches[mI])); ++ cga_list.push_back(boost::tuples::make_tuple(c.Copy(), &bs[mI], ancestral_matches[mI])); + } + + stack<node_id_t> node_stack; diff --git a/sci-libs/libmems/libmems-1.6_p1-r1.ebuild b/sci-libs/libmems/libmems-1.6_p1-r2.ebuild similarity index 64% rename from sci-libs/libmems/libmems-1.6_p1-r1.ebuild rename to sci-libs/libmems/libmems-1.6_p1-r2.ebuild index ac61e54..c00e615 100644 --- a/sci-libs/libmems/libmems-1.6_p1-r1.ebuild +++ b/sci-libs/libmems/libmems-1.6_p1-r2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -12,16 +12,15 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"; SLOT="0" LICENSE="GPL-2" -IUSE="doc" +IUSE="doc static-libs" KEYWORDS="~amd64 ~x86" -CDEPEND=" - dev-libs/boost +RDEPEND=" + dev-libs/boost:= sci-libs/libgenome sci-libs/libmuscle" -DEPEND="${CDEPEND} +DEPEND="${RDEPEND} doc? ( app-doc/doxygen )" -RDEPEND="${CDEPEND}" PATCHES=( "${FILESDIR}"/${P}-build.patch @@ -29,9 +28,23 @@ PATCHES=( "${FILESDIR}"/${P}-gcc-4.7.patch "${FILESDIR}"/${P}-broken-constness.patch "${FILESDIR}"/${P}-format-security.patch - ) + "${FILESDIR}"/${P}-fix-c++14.patch +) src_prepare() { default eautoreconf } + +src_configure() { + econf \ + --enable-shared \ + $(use_enable static-libs static) +} + +src_install() { + default + + # package provides .pc files + find "${D}" -name '*.la' -delete || die +}
