commit: 12cca09b9ad1ee543efaf15e08be3deb844fd741 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Aug 26 08:45:50 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Aug 26 08:45:50 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=12cca09b
sci-biology/germline: new package Package-Manager: portage-2.3.0 sci-biology/germline/germline-1.5.1.ebuild | 35 ++++++++++++++++++++++++++++++ sci-biology/germline/metadata.xml | 12 ++++++++++ 2 files changed, 47 insertions(+) diff --git a/sci-biology/germline/germline-1.5.1.ebuild b/sci-biology/germline/germline-1.5.1.ebuild new file mode 100644 index 0000000..e2402fc --- /dev/null +++ b/sci-biology/germline/germline-1.5.1.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit versionator toolchain-funcs + +MY_PV=$(replace_all_version_separators '-') + +DESCRIPTION="Find shared segments of Identity by Descent (IBD) between pairs of individuals" +HOMEPAGE="http://www.cs.columbia.edu/~gusev/germline + http://genome.cshlp.org/content/19/2/318.full"; +SRC_URI="http://www.cs.columbia.edu/~gusev/${PN}/${PN}-${MY_PV}.tar.gz"; + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="dev-libs/boost" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/${PN}-${MY_PV} + +src_prepare(){ + sed -e "s/-O3 /${CXXFLAGS} /;s/g++/$(tc-getCXX)/" -i Makefile || die + sed -e "s#diff -q -s test/expected.match test/generated.match#diff -q -s test/expected.match test/generated.match || cat test/generated.err#" -i Makefile || die + sed -e "s/^all: clean germline bmatch test/all: clean germline bmatch/" -i Makefile || die + default +} + +src_install(){ + dobin germline parse_bmatch +} diff --git a/sci-biology/germline/metadata.xml b/sci-biology/germline/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/germline/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
