commit: 27fe4b6568a7d820178adf8f7b963bfeb79f966e Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Jul 18 11:03:20 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Jul 18 11:03:20 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=27fe4b65
sci-biology/plinkseq: zap bundled dev-libs/protobuf; needs more fixes Package-Manager: portage-2.2.28 sci-biology/plinkseq/plinkseq-0.10.ebuild | 13 ++++++++++--- 1 file changed, 10 insertions(+), 3 deletions(-) diff --git a/sci-biology/plinkseq/plinkseq-0.10.ebuild b/sci-biology/plinkseq/plinkseq-0.10.ebuild index 1c94b80..e8665ce 100644 --- a/sci-biology/plinkseq/plinkseq-0.10.ebuild +++ b/sci-biology/plinkseq/plinkseq-0.10.ebuild @@ -4,7 +4,9 @@ EAPI=5 -inherit toolchain-funcs +AUTOTOOLS_AUTORECONF=yes + +inherit toolchain-funcs autotools-utils DESCRIPTION="C/C++ library for working with human genetic variation data" HOMEPAGE="http://atgu.mgh.harvard.edu/plinkseq"; @@ -14,15 +16,20 @@ SRC_URI="http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/plinkseq-src-latest.t LICENSE="GPL-2" SLOT="0" -KEYWORDS="~amd64" +KEYWORDS="" IUSE="" -DEPEND="sys-libs/zlib" +DEPEND="sys-libs/zlib + dev-libs/protobuf" RDEPEND="${DEPEND}" src_prepare(){ sed -e "s/gcc/$(tc-getCC)/g;s/g++/$(tc-getCXX)/g;s/-O3/${CFLAGS}/g" -i config_defs.Makefile || die sed -e "s/= -static/=/g" -i config_defs.Makefile || die + rm -rf sources/ext/protobuf-* || die + sed -e 's#^all:.*#all: echo "skipping compilation of bundled dev-libs/protobuf"#' -i sources/ext/Makefile || die + find . -name \*.proto | while read f; do d=`dirname $f`; pushd $d; protoc --cpp_out=. *.proto || exit 255; popd; done || die + autotools-utils_src_prepare } src_install(){
