commit: 9e0134a54a52511520a2adc08d58a9304d130294 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Apr 3 17:47:49 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Apr 3 17:47:49 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9e0134a5
sci-biology/prinseq-lite: new package, needs more perl modules Package-Manager: portage-2.2.28 sci-biology/prinseq-lite/metadata.xml | 12 ++++++++ .../prinseq-lite/prinseq-lite-0.20.4.ebuild | 36 ++++++++++++++++++++++ 2 files changed, 48 insertions(+) diff --git a/sci-biology/prinseq-lite/metadata.xml b/sci-biology/prinseq-lite/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/prinseq-lite/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild b/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild new file mode 100644 index 0000000..b7ae2fb --- /dev/null +++ b/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +DESCRIPTION="Describe, trim, reformat and convert to or form FASTA/FASTQ files" +HOMEPAGE="http://prinseq.sourceforge.net/"; +SRC_URI="https://sourceforge.net/projects/prinseq/files/standalone/${P}.tar.gz"; + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + virtual/perl-Getopt-Long + virtual/perl-File-Temp + dev-perl/Digest-MD5-File" +# Cwd +# Pod::Usage +# Fcntl qw(:flock SEEK_END) +# List::Util qw(sum min max) + +# prinseq-graphs.pl needs in addition +# https://sourceforge.net/projects/prinseq/files/README.txt +# JSON +# Cairo +# Statistics::PCA +# perl-core/MIME-Base64 + +src_install(){ + dobin *.pl + dodoc README +}
