commit: efe8a4f25b66f0f3dbd800e26d8f12973330b5c8 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Apr 1 19:11:50 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Apr 1 19:11:50 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=efe8a4f2
sci-biology/MolBioLib: yet another package with bundled samtools, bamtools etc. Package-Manager: portage-2.2.28 sci-biology/MolBioLib/MolBioLib-5.ebuild | 31 +++++++++++++++++++++++++++++++ sci-biology/MolBioLib/metadata.xml | 12 ++++++++++++ 2 files changed, 43 insertions(+) diff --git a/sci-biology/MolBioLib/MolBioLib-5.ebuild b/sci-biology/MolBioLib/MolBioLib-5.ebuild new file mode 100644 index 0000000..5cb9ea2 --- /dev/null +++ b/sci-biology/MolBioLib/MolBioLib-5.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +DESCRIPTION="C++11 framework for rapid develop and deploy of bioinformatic tasks" +HOMEPAGE="https://sourceforge.net/projects/molbiolib"; +SRC_URI="https://sourceforge.net/projects/molbiolib/files/MolBioLib_public.version${PV}.tar.gz"; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +# contains bundled samtools-0.1.18 and bamtools (pezmaster31-bamtools-d553a62) which contains jsoncpp +# also needs app-doc/doxygen +DEPEND="dev-lang/perl + sys-devel/gcc:* + sys-devel/clang + >=sci-biology/samtools-0.1.18:0 + <sci-biology/samtools-1:0" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/MolBioLib + +src_compile(){ + perl MakeAllApps.pl || die +} + +# src_install() needs to be written diff --git a/sci-biology/MolBioLib/metadata.xml b/sci-biology/MolBioLib/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/MolBioLib/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
