commit: b4e77f4cf03a055b7af8a2566bc1252590da2662 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Mar 31 21:57:29 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Mar 31 21:57:29 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b4e77f4c
sci-biology/karect: new package Package-Manager: portage-2.2.28 sci-biology/karect/karect-1.0.0.ebuild | 33 +++++++++++++++++++++++++++++++++ sci-biology/karect/metadata.xml | 12 ++++++++++++ 2 files changed, 45 insertions(+) diff --git a/sci-biology/karect/karect-1.0.0.ebuild b/sci-biology/karect/karect-1.0.0.ebuild new file mode 100644 index 0000000..9189910 --- /dev/null +++ b/sci-biology/karect/karect-1.0.0.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit toolchain-funcs + +DESCRIPTION="Correct mismatches and indels of raw reads incl. paired-end" +HOMEPAGE="https://github.com/aminallam/karect + http://bioinformatics.oxfordjournals.org/content/31/21/3421.abstract"; +SRC_URI="https://codeload.github.com/aminallam/karect/legacy.tar.gz/master -> karect-1.0.0.tar.gz" +# actually fetches aminallam-karect-v1.0-0-gba3ad54.tar.gz +# https://github.com/aminallam/karect.git + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/aminallam-karect-ba3ad54/ + +src_compile(){ + $(tc-getCXX) ${CXXFLAGS} -pthread -lpthread karect.cpp -o karect || die +} + +src_install(){ + dobin karect + dodoc karect_manual.pdf README README.md +} diff --git a/sci-biology/karect/metadata.xml b/sci-biology/karect/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/karect/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
