commit: eb4301c49eff60ce66d076810afbe5a0ed385f9e Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Mar 30 21:25:16 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Mar 30 21:25:16 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=eb4301c4
sci-biology/CONTIGuator: version bump; added KEYWORDS because DEPENDencies are in the tree now Package-Manager: portage-2.2.28 sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild | 31 ++++++++++++++++++++++++ sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild | 17 ------------- 2 files changed, 31 insertions(+), 17 deletions(-) diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild new file mode 100644 index 0000000..b86613b --- /dev/null +++ b/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions" +HOMEPAGE="http://contiguator.sourceforge.net"; +SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz + https://sourceforge.net/projects/contiguator/files/README.md"; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + >=sci-biology/abacas-1.3.1 + sci-biology/primer3 + || ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ ) + sci-biology/biopython + sci-biology/mummer + || ( sci-biology/artemis || ( sci-biology/artemis-bin sci-biology/act-bin ) )" + +S="${WORKDIR}"/CONTIGuator_v"${PV}" + +src_install(){ + dobin CONTIGuator.py + dodoc Manual.pdf "${DISTDIR}"/README.md +} diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild deleted file mode 100644 index 6609fc0..0000000 --- a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild +++ /dev/null @@ -1,17 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions" -HOMEPAGE="http://contiguator.sourceforge.net"; -SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz"; - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND="( sci-biology/artemis sci-biology/artemis-bin )" -RDEPEND="${DEPEND}"
