commit: f020b550bf8bf4e51784679da95213ed2a50bc23 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Mar 30 14:22:08 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Mar 30 14:22:08 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f020b550
sci-biology/artemis-bin: install docs, cleanup ebuild and bring it in sync with sci-biology/act-bin and sci-biology/artemis-9999 Package-Manager: portage-2.2.28 sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild | 27 ++++++++++++++++++---- 1 file changed, 22 insertions(+), 5 deletions(-) diff --git a/sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild b/sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild index e0c9fe9..7f5a97b 100644 --- a/sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild +++ b/sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild @@ -2,24 +2,26 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 inherit java-pkg-2 MY_V="16" -DESCRIPTION="DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool" +DESCRIPTION="DNA sequence viewer, annotation (Artemis) without comparison (ACT) tool" HOMEPAGE="http://www.sanger.ac.uk/resources/software/artemis"; SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/v"${PV}"/artemis_compiled_v"${PV}".tar.gz ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/v"${PV}"/artemis_v"${PV}".jar ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/v"${PV}"/sartemis_v"${PV}".jar - ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/artemis.pdf"; + ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/artemis_manual_complete.pdf -> ${P}.manual.pdf + ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/release_notes.txt -> ${P}.release_notes.txt + ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/art_html_build.zip -> ${P}.html_build.zip" LICENSE="GPL-2" SLOT="0" KEYWORDS="~amd64" IUSE="" -S="${WORKDIR}"/artemis +S="${WORKDIR}" DEPEND=" !sci-biology/artemis @@ -27,12 +29,24 @@ DEPEND=" RDEPEND="${DEPEND} >=virtual/jre-1.6" +src_unpack(){ + unzip "${DISTDIR}"/${P}.html_build.zip || die +} + +src_prepare(){ + default + cd art_html_build || die + rm -f .DS_Store HTML.index HTML.manifest || die +} + src_install(){ cp -p "${DISTDIR}"/artemis_v"${PV}".jar artemis.jar || die java-pkg_dojar artemis.jar cp -p "${DISTDIR}"/sartemis_v"${PV}".jar sartemis.jar || die java-pkg_dojar sartemis.jar - dodoc "${DISTDIR}"/artemis.pdf README + dodoc "${DISTDIR}"/${P}.manual.pdf "${DISTDIR}"/${P}.release_notes.txt + insinto /usr/share/doc/"${PN}"/html + doins art_html_build/* } # artemis_compiled_v16.0.11.tar.gz contains compiled binaries but also java *.class files @@ -41,4 +55,7 @@ src_install(){ pkg_postinst(){ einfo "For BAM file support please install sci-biology/BamView" + einfo "You may find interesting the additional web resources:" + einfo "http://www.webact.org/WebACT"; + einfo "http://www.hpa-bioinfotools.org.uk/pise/double_act.html"; }
