commit: 82a3be8736c06ab5ce7f9219c05b0f20a7710e1a Author: Thomas Kahle <tomka <AT> gentoo <DOT> org> AuthorDate: Sun Feb 7 16:44:18 2016 +0000 Commit: Thomas Kahle <tomka <AT> gentoo <DOT> org> CommitDate: Sun Feb 7 16:44:41 2016 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=82a3be87
sci-mathematics/Macaulay2: bump to 1.8.2.1 Package-Manager: portage-2.2.26 sci-mathematics/Macaulay2/Macaulay2-1.8.2.1.ebuild | 136 +++++++++++++++++++++ sci-mathematics/Macaulay2/Manifest | 1 + .../Macaulay2/files/Macaulay2-1.8.2.1-lapack.patch | 50 ++++++++ 3 files changed, 187 insertions(+) diff --git a/sci-mathematics/Macaulay2/Macaulay2-1.8.2.1.ebuild b/sci-mathematics/Macaulay2/Macaulay2-1.8.2.1.ebuild new file mode 100644 index 0000000..f779844 --- /dev/null +++ b/sci-mathematics/Macaulay2/Macaulay2-1.8.2.1.ebuild @@ -0,0 +1,136 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit autotools elisp-common eutils flag-o-matic python-single-r1 toolchain-funcs + +# To stop the download madness we now roll our own tarball (Feb 2016) +DESCRIPTION="Research tool for commutative algebra and algebraic geometry" +HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"; +BASE_URI="http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/"; +BASE_URI2="http://dev.gentoo.org/~tomka/files/"; +SRC_URI=" + ${BASE_URI2}/${P}-fat.tar.bz2 +" + +SLOT="0" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86" +IUSE="debug emacs +optimization" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +DEPEND="${PYTHON_DEPS} + sys-process/time + virtual/pkgconfig" + +RDEPEND="${PYTHON_DEPS} + sys-libs/gdbm + sci-mathematics/pari[gmp] + >=sys-libs/readline-6.1 + dev-libs/libxml2:2 + sci-mathematics/flint[gc] + sci-mathematics/frobby + sci-mathematics/4ti2 + sci-mathematics/nauty + >=sci-mathematics/normaliz-2.8 + sci-mathematics/gfan + sci-libs/cdd+ + sci-libs/cddlib + sci-libs/lrslib[gmp] + virtual/blas + virtual/lapack + dev-util/ctags + sys-libs/ncurses + >=dev-libs/boehm-gc-7.4[threads] + dev-libs/libatomic_ops + emacs? ( virtual/emacs )" + +SITEFILE=70Macaulay2-gentoo.el + +S="${WORKDIR}/M2/M2" + +pkg_setup () { + tc-export CC CPP CXX PKG_CONFIG + append-cppflags "-I/usr/include/frobby" + # gtest needs python:2 + python-single-r1_pkg_setup +} + +src_prepare() { + # Patching .m2 files to look for external programs in + # /usr/bin + epatch "${FILESDIR}"/1.6-paths-of-external-programs.patch + + # Shortcircuit lapack tests + epatch "${FILESDIR}/${P}"-lapack.patch + + eautoreconf +} + +src_configure (){ + # Recommended in bug #268064 Possibly unecessary + # but should not hurt anybody. + if ! use emacs; then + tags="ctags" + fi + + # configure instead of econf to enable install with --prefix + ./configure LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" \ + --prefix="${D}/usr" \ + --disable-encap \ + --disable-strip \ + --with-issue=Gentoo \ + $(use_enable optimization optimize) \ + $(use_enable debug) \ + --enable-build-libraries="factory" \ + --with-unbuilt-programs="4ti2 gfan normaliz nauty cddplus lrslib" \ + || die "failed to configure Macaulay" +} + +src_compile() { + # Parallel build not supported yet + emake IgnoreExampleErrors=true -j1 + + if use emacs; then + cd "${S}/Macaulay2/emacs" || die + elisp-compile *.el + fi +} + +src_test() { + # No parallel tests yet & Need to increase the time + # limit for long running tests in Schubert2 to pass + emake TLIMIT=750 -j1 check +} + +src_install () { + # Parallel install not supported yet + emake IgnoreExampleErrors=true -j1 install + + # Remove emacs files and install them in the + # correct place if use emacs + rm -rf "${ED}"/usr/share/emacs/site-lisp || die + if use emacs; then + cd "${S}/Macaulay2/emacs" || die + elisp-install ${PN} *.elc *.el + elisp-site-file-install "${FILESDIR}/${SITEFILE}" + fi +} + +pkg_postinst() { + if use emacs; then + elisp-site-regen + elog "If you want to set a hot key for Macaulay2 in Emacs add a line similar to" + elog "(global-set-key [ f12 ] 'M2)" + elog "in order to set it to F12 (or choose a different one)." + fi +} + +pkg_postrm() { + use emacs && elisp-site-regen +} diff --git a/sci-mathematics/Macaulay2/Manifest b/sci-mathematics/Macaulay2/Manifest index 1cab329..0ee77b1 100644 --- a/sci-mathematics/Macaulay2/Manifest +++ b/sci-mathematics/Macaulay2/Manifest @@ -1,4 +1,5 @@ DIST Macaulay2-1.7_pre.tar.bz2 4639477 SHA256 b14918187724f8911bc50edf87c9692209ff0c2191feb257084adc87609eb1cd SHA512 e70376d1e54b6e239ebb3bf676507a2115fdf5c4fbe05f320553029a84114b74d78f54e4d1bdc7643131f3c45c301e83c21ff99e4d4b675372e971368398d6f5 WHIRLPOOL 396311aadb8a7845deaee5aeca49c431430abc46201e935ef72c4579c9cbe6cd4da85f3e09ff0fe647031f8050fb7c62f63ecce251bf34648c1848cd00eef68e +DIST Macaulay2-1.8.2.1-fat.tar.bz2 26102483 SHA256 11e13fbb4aeeddae1547ed01e499e3f8961446cb9bec8b3162b29cadd2f280c1 SHA512 64f7ea9b01cdb308023a55d8ab8bd6733540f25161dacf27052c071e143418c68c639d5115cf32540c11594b70eae14473f4ef6ce5bd12b6df0722da7c13dd2c WHIRLPOOL 3f9c838d6624f95076957743bf402236708cb2af15b84d24c4446fb193f7608698cc63e43eb8eff8bf878963ce2a9fd85f37128f73d1dbd43d4c0bcda980753d DIST factory-4.0.0+m4.tar.gz 4711126 SHA256 9b2498cc7fc6765f1c586e8061ebe236cdce4b32a44721a235ad2644ec3124fb SHA512 1dacb9aae52e655bccbbc960397b02351050791594dd9c39771f0da7f8c6e8130a8827c2a675c3fbaaa214606e123ac9776e1c73d143649353cefc50cadeea3e WHIRLPOOL 47c4d6261fc6cc9c172035d8774f0cde9fa669fa164fc4a0f47e84ba789d69d14f5a16d042451564412fdedddec71335714ad751508495c22cea25b69f10b925 DIST factory.4.0.1-gftables.tar.gz 2974152 SHA256 9cd158ceb1c2b1c47bdca2c0b004bba92cb0e0aaa0ea6a43ca784ebdce10eebd SHA512 060c58fe6e4565dd5e7649bfa070f14dec3c383a55ebab52a9f02b58a6405e2183e0c7e08964cddb87b81e872c0d8a52d7bd4575d07269547be544cf6a725a76 WHIRLPOOL a721a6824681118578c7289cea77a3f47e5c7654f30dc454eaac76b19cc89e416ae54b8d21a69f897d7087d4b67990634fc960f81df2ea53f428868d608dc9c2 DIST gtest-1.7.0.tar.gz 1001582 SHA256 c0f860eee47c86e0aeb462fd0bdfd70e3975297e0b8b178e0e03a95e1f6c9bc4 SHA512 a9f5c047b39efb2d11b55ee9913662ca402ac6837b3ad2d278ecfbd1caf32ed4546f169e3e92503d57bf3b62ccf89cd062da1c7ea3638aae98e868d2766363c3 WHIRLPOOL 36edbdf8be7c3793a89918a3c43d74e75a6281a37c394f7d2f20506130a76aab04a3beddba01bf7f0e9b6901c7e834ca014c31c913c0ea846d3f6be9c93599d2 diff --git a/sci-mathematics/Macaulay2/files/Macaulay2-1.8.2.1-lapack.patch b/sci-mathematics/Macaulay2/files/Macaulay2-1.8.2.1-lapack.patch new file mode 100644 index 0000000..25185e7 --- /dev/null +++ b/sci-mathematics/Macaulay2/files/Macaulay2-1.8.2.1-lapack.patch @@ -0,0 +1,50 @@ +--- configure.ac 2015-09-03 14:49:42.000000000 +0200 ++++ configure.ac.new 2016-01-27 12:50:07.812215547 +0100 +@@ -1301,46 +1301,7 @@ + BUILTLIBS="$SINGULARLIBS $BUILTLIBS" + fi + +-# we need to do the fortran library testing last, in case AC_SEARCH_LIBS adds +-# one of them to $LIBS, making it impossible to check for the presence of C or +-# C++ libraries. (I'm not sure why putting -llapack on the gcc command line +-# needlessly causes the library to be linked against.) +-FORTRANUSED=no +-if test "$LAPACK" = yes +-then AC_MSG_CHECKING([whether the Accelerate framework is available]) +- SAVELIBS=$LIBS LIBS="-framework Accelerate $LIBS" +- AC_LANG(C) +- AC_LINK_IFELSE( +- [AC_LANG_PROGRAM(,[sgemv_();dgetrf_();])], +- [ +- AC_MSG_RESULT(yes) +- ], +- [ +- AC_MSG_RESULT(no) +- LIBS=$SAVELIBS +- FORTRANUSED=yes +- if test $BUILD_lapack = no +- then AC_LANG(Fortran) +- if test "$FC" = "" +- then AC_MSG_ERROR(no fortran compiler found) +- else AC_MSG_NOTICE(using fortran compiler $FC) +- fi +- AC_SEARCH_LIBS(sgemv,blas f77blas,,BUILD_lapack=yes) +- AC_SEARCH_LIBS(dgetrf,lapack,,BUILD_lapack=yes) +- fi +- ]) +-fi +-test $BUILD_lapack = yes && BUILTLIBS="-llapack -lrefblas $BUILTLIBS" +- +-if test $BUILD_lapack = yes +-then # test whether the fortran compiler can handle lapack, which, starting with +- # version 3.2, requires fortran 90, not fortran 77 +- AC_LANG(Fortran) +- AC_MSG_CHECKING([whether the fortran compiler is modern enough for lapack]) +- AC_COMPILE_IFELSE([instrinsic maxloc], +- AC_MSG_ERROR(the fortran compiler ($FC) does not support the Fortran 90 language required for compiling lapack), +- AC_MSG_RESULT(yes)) +-fi ++BUILTLIBS="$(${PKG_CONFIG} --libs lapack) $BUILTLIBS" + + test "$USE_FCLIBS" = no && FCLIBS= + test "$FORTRANUSED" = no && FCLIBS=
