commit: e8a05912f28739d65c2f1df6c31efaf95a138e59 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Jan 6 18:09:12 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Jan 6 18:09:12 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e8a05912
sci-biology/cast-bin: new package Package-Manager: portage-2.2.26 sci-biology/cast-bin/ChangeLog | 9 ++++++++ sci-biology/cast-bin/cast-bin-20080813.ebuild | 32 +++++++++++++++++++++++++++ sci-biology/cast-bin/metadata.xml | 9 ++++++++ 3 files changed, 50 insertions(+) diff --git a/sci-biology/cast-bin/ChangeLog b/sci-biology/cast-bin/ChangeLog new file mode 100644 index 0000000..aff5d4a --- /dev/null +++ b/sci-biology/cast-bin/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/cast-bin +# Copyright 1999-2016 Gentoo Foundation; Distributed under the GPL v2 +# $Id$ + +*cast-bin-20080813 (06 Jan 2016) + + 06 Jan 2016; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> + +cast-bin-20080813.ebuild, +metadata.xml: + sci-biology/cast-bin: new package diff --git a/sci-biology/cast-bin/cast-bin-20080813.ebuild b/sci-biology/cast-bin/cast-bin-20080813.ebuild new file mode 100644 index 0000000..6f3add2 --- /dev/null +++ b/sci-biology/cast-bin/cast-bin-20080813.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Predict low-complexity regions in putative proteins" +HOMEPAGE="http://bioinformatics.cenargen.embrapa.br/portrait/download"; +SRC_URI="http://bioinformatics.cenargen.embrapa.br/portrait/download/cast-linux.tar.gz"; + +# in 2000 in http://bioinformatics.oxfordjournals.org/content/16/10/915 +# authors stated: +# Availability: CAST (version 1.0) executable binaries are available to academic users free +# of charge under license. Web site entry point, server and additional material: +# http://www.ebi.ac.uk/research/cgg/services/cast/ +# +# but the license file included in cast-linux.tar.gz from 2002 contains GPL-2 license + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/cast-linux + +src_install(){ + dobin cast + dodoc README +} diff --git a/sci-biology/cast-bin/metadata.xml b/sci-biology/cast-bin/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/cast-bin/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
