commit: cc20c5c57f35f32361e627442c3550207c04e4b0
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Dec 31 21:25:08 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Dec 31 21:25:08 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cc20c5c5
sci-biology/maker: DEPEND on external sci-biology/GAL package; rename 'compare'
binary as agreed with upstream
Package-Manager: portage-2.2.26
sci-biology/maker/ChangeLog | 4 ++++
sci-biology/maker/maker-2.31.8.ebuild | 3 +++
2 files changed, 7 insertions(+)
diff --git a/sci-biology/maker/ChangeLog b/sci-biology/maker/ChangeLog
index 16cf654..c06e483 100644
--- a/sci-biology/maker/ChangeLog
+++ b/sci-biology/maker/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 31 Dec 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>
maker-2.31.8.ebuild:
+ sci-biology/maker: DEPEND on external sci-biology/GAL package; rename
+ 'compare' binary as agreed with upstream
+
30 Dec 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>
maker-2.31.8.ebuild:
sci-biology/maker: do install from a top-level directory; there is a file
collision with /usr/bin/compare from media-gfx/imagemagick and with
diff --git a/sci-biology/maker/maker-2.31.8.ebuild
b/sci-biology/maker/maker-2.31.8.ebuild
index bb0dba6..60abb3a 100644
--- a/sci-biology/maker/maker-2.31.8.ebuild
+++ b/sci-biology/maker/maker-2.31.8.ebuild
@@ -37,6 +37,7 @@ DEPEND="
dev-perl/Perl-Unsafe-Signals
dev-perl/forks
dev-perl/forks-shared
+ >=sci-biology/GAL-0.2.1
>=sci-biology/bioperl-1.6
sci-biology/ncbi-tools || ( sci-biology/ncbi-tools++ )
sci-biology/snap
@@ -103,6 +104,8 @@ src_compile(){
src_install(){
cd "${WORKDIR}"/maker || die
+ rm -f bin/fasta_tool # is part of sci-biology/GAL
+ mv bin/compare bin/compare_gff3_to_chado # rename as agreed by
upstream, will be in maker-3 as well
dobin bin/*
dodoc README INSTALL
insinto /usr/share/"{PN}"/GMOD/Apollo
