commit: 9942cc6d89af0ff581857128d04cd32071880686
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Dec 31 21:21:05 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Dec 31 21:21:05 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9942cc6d
sci-biology/trinityrnaseq: do not install bundled GAL but DEPEND on it via
external package as sci-biology/GAL
sci-biology/trinityrnaseq/ChangeLog | 5 +++++
sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild | 3 ++-
sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild | 3 ++-
3 files changed, 9 insertions(+), 2 deletions(-)
diff --git a/sci-biology/trinityrnaseq/ChangeLog
b/sci-biology/trinityrnaseq/ChangeLog
index 405ac83..29796cf 100644
--- a/sci-biology/trinityrnaseq/ChangeLog
+++ b/sci-biology/trinityrnaseq/ChangeLog
@@ -2,6 +2,11 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 31 Dec 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>
+ trinityrnaseq-2.0.6.ebuild, trinityrnaseq-2.1.1.ebuild:
+ sci-biology/trinityrnaseq: do not install bundled GAL but DEPEND on it via
+ external package as sci-biology/GAL
+
*trinityrnaseq-2.1.1 (20 Nov 2015)
20 Nov 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>
diff --git a/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
b/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
index 9d8558a..44f2843 100644
--- a/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
+++ b/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
@@ -24,6 +24,7 @@ RDEPEND="${DEPEND}
sci-biology/parafly
=sci-biology/jellyfish-2.1.4
sci-biology/samtools
+ >=sci-biology/GAL-0.2.1
dev-perl/IO-All"
# ReleaseNotes mentions that <sci-biology/samtools-1.1 is needed
# version of bundled jellyfish is 2.1.4
@@ -43,7 +44,7 @@ src_install(){
dodoc trinity-plugins/fstrozzi-Fastool-7c3e034f05/README.md
#
insinto /usr/share/"${PN}"/util
- rm -f util/fasta_tool
+ rm -f trinity-plugins/GAL_0.2.1 util/fasta_tool
doins -r util/*
#
dobin Inchworm/bin/*
diff --git a/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild
b/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild
index 0d5ba53..49d6b89 100644
--- a/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild
+++ b/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild
@@ -25,6 +25,7 @@ RDEPEND="${DEPEND}
>=sci-libs/htslib-1.2.1
<=sci-biology/samtools-1.1
>=sci-biology/trimmomatic-0.32
+ >=sci-biology/GAL-0.2.1
dev-perl/IO-All"
# ReleaseNotes mentions that <sci-biology/samtools-1.1 is needed
# version of bundled jellyfish is 2.1.4
@@ -52,7 +53,7 @@ src_install(){
dodoc trinity-plugins/fstrozzi-Fastool-7c3e034f05/README.md
#
insinto /usr/share/"${PN}"/util
- rm -f util/fasta_tool
+ rm -f trinity-plugins/GAL_0.2.1 util/fasta_tool
doins -r util/*
#
dobin Inchworm/bin/*
