commit: f08c7474c8fed99cd2614babe0ea5462f31752ae
Author: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
AuthorDate: Fri Dec 25 20:47:28 2015 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Fri Dec 25 20:47:28 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f08c7474
sci-biology/TransDecoder: Fix minorsyn, add missing die
Package-Manager: portage-2.2.24
sci-biology/TransDecoder/ChangeLog | 4 ++++
sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild | 4 ++--
2 files changed, 6 insertions(+), 2 deletions(-)
diff --git a/sci-biology/TransDecoder/ChangeLog
b/sci-biology/TransDecoder/ChangeLog
index ee19193..e9110b4 100644
--- a/sci-biology/TransDecoder/ChangeLog
+++ b/sci-biology/TransDecoder/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 25 Dec 2015; Marius Brehler <mar...@linux.sungazer.de>
+ TransDecoder-2.0.1.ebuild:
+ sci-biology/TransDecoder: Fix minorsyn, add missing die
+
19 Nov 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>
TransDecoder-2.0.1.ebuild:
sci-biology/TransDecoder: note that Pfam-AB was discontinued
diff --git a/sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild
b/sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild
index 113c915..dfe3fbb 100644
--- a/sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild
+++ b/sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild
@@ -15,7 +15,7 @@ if [ "$PV" == "9999" ]; then
EGIT_REPO_URI="https://github.com/TransDecoder/TransDecoder.git";
KEYWORDS=""
else
-
SRC_URI="https://github.com/TransDecoder/TransDecoder/archive/"${PV}".tar.gz ->
${P}.tar.gz"
+
SRC_URI="https://github.com/TransDecoder/TransDecoder/archive/"${PV}".tar.gz ->
${P}.tar.gz"
KEYWORDS="~amd64"
S="${WORKDIR}"/TransDecoder-"${PV}"
fi
@@ -34,7 +34,7 @@ src_prepare(){
rm -rf transdecoder_plugins/cd-hit
for f in PerlLib/*.pm; do
p=`basename $f .pm`;
- sed -e "s#use $p;#use TransDecoder::$p;#" -i PerlLib/*.pm
util/*.pl TransDecoder.LongOrfs TransDecoder.Predict;
+ sed -e "s#use $p;#use TransDecoder::$p;#" -i PerlLib/*.pm
util/*.pl TransDecoder.LongOrfs TransDecoder.Predict || die;
done
epatch "${FILESDIR}"/"${P}"__fix_paths.patch
epatch "${FILESDIR}"/pfam_runner.pl.patch
