commit: 1b4bf42026e44bf3a934c852e0f4cb4db84036c8 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun May 10 19:20:25 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun May 10 19:20:25 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1b4bf420
sci-biology/plinkseq: new package Package-Manager: portage-2.2.18 sci-biology/plinkseq/ChangeLog | 9 +++++++++ sci-biology/plinkseq/metadata.xml | 9 +++++++++ sci-biology/plinkseq/plinkseq-0.10.ebuild | 31 +++++++++++++++++++++++++++++++ 3 files changed, 49 insertions(+) diff --git a/sci-biology/plinkseq/ChangeLog b/sci-biology/plinkseq/ChangeLog new file mode 100644 index 0000000..ade0615 --- /dev/null +++ b/sci-biology/plinkseq/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/plinkseq +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*plinkseq-0.10 (10 May 2015) + + 10 May 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> +metadata.xml, + +plinkseq-0.10.ebuild: + sci-biology/plinkseq: new package diff --git a/sci-biology/plinkseq/metadata.xml b/sci-biology/plinkseq/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/plinkseq/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/plinkseq/plinkseq-0.10.ebuild b/sci-biology/plinkseq/plinkseq-0.10.ebuild new file mode 100644 index 0000000..153c161 --- /dev/null +++ b/sci-biology/plinkseq/plinkseq-0.10.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit toolchain-funcs + +DESCRIPTION="C/C++ library for working with human genetic variation data" +HOMEPAGE="http://atgu.mgh.harvard.edu/plinkseq"; +SRC_URI="http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/plinkseq-src-latest.tgz -> ${P}.tgz" +# https://bitbucket.org/statgen/plinkseq.git +# http://pngu.mgh.harvard.edu/~purcell/plink/download.shtml + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="sys-libs/zlib" +RDEPEND="${DEPEND}" + +src_prepare(){ + sed -e "s/gcc/$(tc-getCC)/g;s/g++/$(tc-getCXX)/g;s/-O3/${CFLAGS}/g" -i config_defs.Makefile || die + sed -e "s/= -static/=/g" -i config_defs.Makefile || die +} + +src_install(){ + cd build/execs || die + dobin gcol browser pseq behead mm smp tab2vcf mongoose pdas +}
