commit: cca8132f7c8070e2d6c06e0efbe01a1860a92fba Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri May 1 22:40:41 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri May 1 22:40:41 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cca8132f
sci-biology/hexamer: new package Package-Manager: portage-2.2.18 sci-biology/hexamer/ChangeLog | 9 +++++++++ sci-biology/hexamer/hexamer-19990330.ebuild | 30 +++++++++++++++++++++++++++++ sci-biology/hexamer/metadata.xml | 9 +++++++++ 3 files changed, 48 insertions(+) diff --git a/sci-biology/hexamer/ChangeLog b/sci-biology/hexamer/ChangeLog new file mode 100644 index 0000000..7a2252f --- /dev/null +++ b/sci-biology/hexamer/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/hexamer +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*hexamer-19990330 (01 May 2015) + + 01 May 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> + +hexamer-19990330.ebuild, +metadata.xml: + sci-biology/hexamer: new package diff --git a/sci-biology/hexamer/hexamer-19990330.ebuild b/sci-biology/hexamer/hexamer-19990330.ebuild new file mode 100644 index 0000000..fda4818 --- /dev/null +++ b/sci-biology/hexamer/hexamer-19990330.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit toolchain-funcs + +DESCRIPTION="Predict CDS using 6mers without deriving information from base composition" +HOMEPAGE="http://www.sanger.ac.uk/resources/software"; +SRC_URI="ftp://ftp.sanger.ac.uk/pub/users/rd/hexamer.tar.gz -> hexamer-19990330.tar.gz" + +LICENSE="all-rights-reserved" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/hexamer + +src_prepare(){ + sed -e "s#cc -g#$(tc-getCC) ${CFLAGS}#" -i Makefile || die +} + +src_install(){ + dobin hexamer hextable + dodoc README +} diff --git a/sci-biology/hexamer/metadata.xml b/sci-biology/hexamer/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/hexamer/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
