commit: ae8cd41f5303f3507f0b77e67c46c3ca3b0d62d1 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Apr 30 23:19:25 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Apr 30 23:19:25 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ae8cd41f
sci-biology/reptile: new package Package-Manager: portage-2.2.18 sci-biology/reptile/ChangeLog | 9 ++++++++ sci-biology/reptile/metadata.xml | 9 ++++++++ sci-biology/reptile/reptile-1.1.ebuild | 41 ++++++++++++++++++++++++++++++++++ 3 files changed, 59 insertions(+) diff --git a/sci-biology/reptile/ChangeLog b/sci-biology/reptile/ChangeLog new file mode 100644 index 0000000..bf348f8 --- /dev/null +++ b/sci-biology/reptile/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/reptile +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*reptile-1.1 (30 Apr 2015) + + 30 Apr 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> +metadata.xml, + +reptile-1.1.ebuild: + sci-biology/reptile: new package diff --git a/sci-biology/reptile/metadata.xml b/sci-biology/reptile/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/reptile/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/reptile/reptile-1.1.ebuild b/sci-biology/reptile/reptile-1.1.ebuild new file mode 100644 index 0000000..fd6ec77 --- /dev/null +++ b/sci-biology/reptile/reptile-1.1.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Illumina read corrector" +HOMEPAGE="http://aluru-sun.ece.iastate.edu/doku.php?id=reptile"; +SRC_URI="http://aluru-sun.ece.iastate.edu/lib/exe/fetch.php?media=source:reptile-v${PV}.zip -> "${PN}"-v"${PV}".zip" + +LICENSE="LGPL-3 GPL-3 Boost-1.0" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + dev-lang/perl" + +S="${WORKDIR}"/"${PN}"-v"${PV}" + +src_prepare(){ + sed -e 's#-Wall -O3#$(CXXFLAGS)#' -i src/makefile || die + sed -e 's#-Wall -O3#$(CXXFLAGS)#' -i utils/reptile_merger/makefile || die + sed -e 's#-Wall -O3#$(CXXFLAGS)#' -i utils/seq-analy/makefile || die +} + +src_compile(){ + cd src || die + emake all + cd ../utils/reptile_merger || die + emake all + cd ../seq-analy || die + emake all +} + +src_install(){ + newbin src/reptile-v1.1 reptile + dobin utils/reptile_merger/reptile_merger + dobin utils/fastq-converter-v2.0.pl +}
