commit: 82fd3f940178422894c2c7c0c0cbd4b8d4582d05 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Wed Feb 4 14:10:39 2026 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Wed Feb 4 14:10:39 2026 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=82fd3f94
sci-biology/emboss: fix GCC 15 errors Closes: https://bugs.gentoo.org/712504 Closes: https://bugs.gentoo.org/920917 Closes: https://bugs.gentoo.org/961058 Signed-off-by: David Seifert <soap <AT> gentoo.org> sci-biology/emboss/Manifest | 2 +- .../{emboss-6.6.0-r3.ebuild => emboss-6.6.0-r4.ebuild} | 13 +++---------- 2 files changed, 4 insertions(+), 11 deletions(-) diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest index fa61d72a1db4..ccdb0846835b 100644 --- a/sci-biology/emboss/Manifest +++ b/sci-biology/emboss/Manifest @@ -1,2 +1,2 @@ DIST EMBOSS-6.6.0.tar.gz 117962028 BLAKE2B 91bf3c680290bd975d2ddb5251089d7f75f8a44a26e1247e93d2c9cf2f23e6b89c4218022ba1af0c940136ff56782f40d2c4604dc756b400ae23f223da7f3cca SHA512 2d28a03381f7dc98d205aa50202fbbac02ad218fc775d86579d310296be124403623484b1907154d915f15cd32a9f8cf16ecfaa6c4a28b362e24dc8e6380b75a -DIST emboss-6.6.0-patches-r1.tar.xz 5384 BLAKE2B 7899141862880d000e1624e9df914b1918cd02645c0d14128bcffd41d76e3669404a718f25471795268e4a00d610377186b7cb73a126e30f74df80d04d22faf9 SHA512 95825a3bcaa6340d26fde65f3b77574e42fd424440ee48f2fad94b6e696346fe4f6e4ab48c7dcfe1e9c3311a8a7750defc004c2db40cc36f42e980a19e6bd0bd +DIST emboss-6.6.0-patches-r2.tar.xz 10616 BLAKE2B 123251c54cccdbec84232a9b14f1907f27ed8885c25166265d679aed4f530717692ed3217a53b67582d7f9ac296b922e19be6096ab23d8bd0ff9470f56fe06eb SHA512 6db0c33f1f114dda2cea97200b7cd05d2173c68b5f939d681220d7ca7e253dc08b83070393b8844d1fb0292fe9cb8b23463459badcacd6421220e775d533b589 diff --git a/sci-biology/emboss/emboss-6.6.0-r3.ebuild b/sci-biology/emboss/emboss-6.6.0-r4.ebuild similarity index 77% rename from sci-biology/emboss/emboss-6.6.0-r3.ebuild rename to sci-biology/emboss/emboss-6.6.0-r4.ebuild index 6f9af21e908a..f06a93896d10 100644 --- a/sci-biology/emboss/emboss-6.6.0-r3.ebuild +++ b/sci-biology/emboss/emboss-6.6.0-r4.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2024 Gentoo Authors +# Copyright 1999-2026 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 @@ -8,7 +8,7 @@ inherit autotools emboss-r3 readme.gentoo-r1 DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package" SRC_URI=" ftp://emboss.open-bio.org/pub/${PN^^}/${P^^}.tar.gz - https://dev.gentoo.org/~soap/distfiles/${P}-patches-r1.tar.xz"; + https://dev.gentoo.org/~soap/distfiles/${P}-patches-r2.tar.xz"; S="${WORKDIR}/${P^^}" LICENSE+=" Apache-2.0 GPL-3+ CC-BY-3.0" @@ -29,14 +29,7 @@ PDEPEND=" sci-biology/rebase )" -PATCHES=( - "${WORKDIR}"/patches/${P}-fix-build-system.patch - "${WORKDIR}"/patches/${P}-FORTIFY_SOURCE-fix.patch - "${WORKDIR}"/patches/${P}-plplot-declarations.patch - "${WORKDIR}"/patches/${P}-qa-implicit-declarations.patch - "${WORKDIR}"/patches/${P}-C99-bool.patch - "${WORKDIR}"/patches/${P}-Wimplicit-function-declaration.patch -) +PATCHES=( "${WORKDIR}"/patches/ ) src_prepare() { default
