commit: dbe9de4c173e746690c8bd2f979d0866934ad7f5 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Mar 30 18:26:24 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Mar 30 18:26:24 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=dbe9de4c
sci-biology/snap: new package Package-Manager: portage-2.2.18 sci-biology/snap/ChangeLog | 9 +++++++++ sci-biology/snap/metadata.xml | 9 +++++++++ sci-biology/snap/snap-20131129.ebuild | 35 +++++++++++++++++++++++++++++++++++ 3 files changed, 53 insertions(+) diff --git a/sci-biology/snap/ChangeLog b/sci-biology/snap/ChangeLog new file mode 100644 index 0000000..68ed8bc --- /dev/null +++ b/sci-biology/snap/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/snap +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*snap-20131129 (30 Mar 2015) + + 30 Mar 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> +metadata.xml, + +snap-20131129.ebuild: + sci-biology/snap: new package diff --git a/sci-biology/snap/metadata.xml b/sci-biology/snap/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/snap/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/snap/snap-20131129.ebuild b/sci-biology/snap/snap-20131129.ebuild new file mode 100644 index 0000000..6592102 --- /dev/null +++ b/sci-biology/snap/snap-20131129.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit eutils toolchain-funcs + +DESCRIPTION="HMM-based prokaryotic and eukaryotic gene prediction tool" +HOMEPAGE="http://korflab.ucdavis.edu/software.html"; +SRC_URI="http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz"; + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/snap + +src_prepare(){ + sed -e "s#CC=\"gcc.*#CC=$(tc-getCC)#" -i Zoe/Makefile || die + sed -e "s#CC=\"gcc.*#CC=$(tc-getCC)#" -i Makefile || die +} + +src_install(){ + echo "ZOE=/usr/share/snap/HMM" > 99snap || die + doenvd 99snap + insinto /usr/share/snap/HMM + doins HMM/[a-zA-Z]*.hmm + dobin snap fathom forge *.pl + dodoc 00README +}
