jlec        15/03/29 13:10:18

  Modified:             ChangeLog
  Added:                t-coffee-11.00.ebuild
  Removed:              t-coffee-8.93.ebuild
  Log:
  Version Bump; drop old
  
  (Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key 
B9D4F231BD1558AB!)

Revision  Changes    Path
1.54                 sci-biology/t-coffee/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.54&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.54&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/ChangeLog?r1=1.53&r2=1.54

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v
retrieving revision 1.53
retrieving revision 1.54
diff -u -r1.53 -r1.54
--- ChangeLog   9 Feb 2015 12:50:38 -0000       1.53
+++ ChangeLog   29 Mar 2015 13:10:18 -0000      1.54
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/t-coffee
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.53 
2015/02/09 12:50:38 blueness Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.54 
2015/03/29 13:10:18 jlec Exp $
+
+*t-coffee-11.00 (29 Mar 2015)
+
+  29 Mar 2015; Justin Lecher <[email protected]> +t-coffee-11.00.ebuild,
+  -t-coffee-8.93.ebuild:
+  Version Bump; drop old
 
   09 Feb 2015; Anthony G. Basile <[email protected]> t-coffee-8.69.ebuild,
   t-coffee-8.93.ebuild, t-coffee-9.03.1318-r1.ebuild:



1.1                  sci-biology/t-coffee/t-coffee-11.00.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/t-coffee-11.00.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/t-coffee-11.00.ebuild?rev=1.1&content-type=text/plain

Index: t-coffee-11.00.ebuild
===================================================================
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-11.00.ebuild,v 
1.1 2015/03/29 13:10:18 jlec Exp $

EAPI=5

inherit eutils flag-o-matic toolchain-funcs

MY_HASH="8cbe486"
MY_PV="${PV}.${MY_HASH}"
MY_P="T-COFFEE_distribution_Version_${MY_PV}"

DESCRIPTION="A multiple sequence alignment package"
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html";
SRC_URI="http://www.tcoffee.org/Packages/Stable/Version_${MY_PV}/${MY_P}.tar.gz";

LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"

RDEPEND="
        sci-biology/clustalw
        sci-chemistry/tm-align"
DEPEND=""

S="${WORKDIR}/${MY_P}"

src_prepare() {
        sed \
                -e '/@/s:.*;:\t:g' \
                -e '/Linking/s:$(CC):$(CC) $(CFLAGS) $(LDFLAGS):g' \
                -i t_coffee_source/makefile || die
}

src_compile() {
        [[ $(gcc-version) == "3.4" ]] || \
                [[ $(gcc-version) == "4.1" ]] && \
                append-flags -fno-unit-at-a-time
        emake \
                V=1 \
                CC="$(tc-getCXX)" \
                CFLAGS="${CXXFLAGS} -Wno-write-strings -Wno-unused-result" \
                -C t_coffee_source t_coffee
}

src_install() {
        dobin t_coffee_source/t_coffee

        if use examples; then
                insinto /usr/share/${PN}
                doins -r example
        fi
}




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