jlec 15/03/28 17:03:16 Modified: metadata.xml ChangeLog Added: emboss-6.6.0.ebuild Log: Import latest changes from science overlay, thanks Ted Tanberry for the work; fixes #504680 (Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.6 sci-biology/emboss/metadata.xml file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/emboss/metadata.xml?rev=1.6&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/emboss/metadata.xml?rev=1.6&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/emboss/metadata.xml?r1=1.5&r2=1.6 Index: metadata.xml =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/emboss/metadata.xml,v retrieving revision 1.5 retrieving revision 1.6 diff -u -r1.5 -r1.6 --- metadata.xml 11 Mar 2011 07:05:50 -0000 1.5 +++ metadata.xml 28 Mar 2015 17:03:16 -0000 1.6 @@ -1,8 +1,8 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> <pkgmetadata> - <herd>sci-biology</herd> - <longdescription> + <herd>sci-biology</herd> + <longdescription> EMBOSS is "The European Molecular Biology Open Software Suite". EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user 1.72 sci-biology/emboss/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/emboss/ChangeLog?rev=1.72&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/emboss/ChangeLog?rev=1.72&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/emboss/ChangeLog?r1=1.71&r2=1.72 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v retrieving revision 1.71 retrieving revision 1.72 diff -u -r1.71 -r1.72 --- ChangeLog 28 Dec 2014 16:46:09 -0000 1.71 +++ ChangeLog 28 Mar 2015 17:03:16 -0000 1.72 @@ -1,6 +1,16 @@ # ChangeLog for sci-biology/emboss -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.71 2014/12/28 16:46:09 titanofold Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.72 2015/03/28 17:03:16 jlec Exp $ + +*emboss-6.6.0 (28 Mar 2015) + + 28 Mar 2015; Justin Lecher <[email protected]> +emboss-6.6.0.ebuild, + +files/README.gentoo, +files/emboss-6.6.0_FORTIFY_SOURCE-fix.patch, + +files/emboss-6.6.0_fix-build-system.patch, + +files/emboss-6.6.0_plplot-declarations.patch, + +files/emboss-6.6.0_qa-implicit-declarations.patch, metadata.xml: + Import latest changes from science overlay, thanks Ted Tanberry for the work; + fixes #504680 28 Dec 2014; Aaron W. Swenson <[email protected]> emboss-6.3.1_p4.ebuild, emboss-6.3.1_p4-r1.ebuild: 1.1 sci-biology/emboss/emboss-6.6.0.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/emboss/emboss-6.6.0.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/emboss/emboss-6.6.0.ebuild?rev=1.1&content-type=text/plain Index: emboss-6.6.0.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/emboss-6.6.0.ebuild,v 1.1 2015/03/28 17:03:16 jlec Exp $ EAPI=5 AUTOTOOLS_AUTORECONF=1 inherit autotools-utils emboss-r1 eutils readme.gentoo DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package" SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz"; KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos" IUSE+=" minimal" RDEPEND+=" !sys-devel/cons" PDEPEND+=" !minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/prints sci-biology/prosite sci-biology/rebase )" S="${WORKDIR}"/EMBOSS-${PV} DOCS=( ChangeLog AUTHORS NEWS THANKS FAQ ) PATCHES=( "${FILESDIR}"/${P}_fix-build-system.patch "${FILESDIR}"/${P}_FORTIFY_SOURCE-fix.patch "${FILESDIR}"/${P}_plplot-declarations.patch "${FILESDIR}"/${P}_qa-implicit-declarations.patch ) src_install() { # Use autotools-utils_* to remove useless *.la files autotools-utils_src_install readme.gentoo_create_doc # Install env file for setting libplplot and acd files path. cat > 22emboss <<- EOF # ACD files location EMBOSS_ACDROOT="${EPREFIX}/usr/share/EMBOSS/acd" EMBOSS_DATA="${EPREFIX}/usr/share/EMBOSS/data" EOF doenvd 22emboss # Remove useless dummy files find "${ED}"/usr/share/EMBOSS -name dummyfile -delete || die "Failed to remove dummy files." # Move the provided codon files to a different directory. This will avoid # user confusion and file collisions on case-insensitive file systems (see # bug #115446). This change is documented in "README.gentoo". mv "${ED}"/usr/share/EMBOSS/data/CODONS{,.orig} || \ die "Failed to move CODON directory." }
