[gentoo-commits] proj/sci:master commit in: sci-biology/transdecoder/

[Martin Mokrejs]

commit:     2d947262e46f78e5769b5ee8c3d1e5a8dc6fe462
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 19 10:46:20 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 19 10:46:20 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=2d947262

dropped hmmer dependency altogether, added pkg_postinst() with usage/dependency 
info

Package-Manager: portage-2.2.15

 sci-biology/transdecoder/ChangeLog                 | 5 +++++
 sci-biology/transdecoder/transdecoder-2.0.1.ebuild | 9 ++++++++-
 2 files changed, 13 insertions(+), 1 deletion(-)

diff --git a/sci-biology/transdecoder/ChangeLog 
b/sci-biology/transdecoder/ChangeLog
index 2b30ad0..7e276d1 100644
--- a/sci-biology/transdecoder/ChangeLog
+++ b/sci-biology/transdecoder/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  19 Mar 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>
+  transdecoder-2.0.1.ebuild:
+  dropped hmmer dependency altogether, added pkg_postinst() with
+  usage/dependency info
+
 *transdecoder-2.0.1 (19 Mar 2015)
 
   19 Mar 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>

diff --git a/sci-biology/transdecoder/transdecoder-2.0.1.ebuild 
b/sci-biology/transdecoder/transdecoder-2.0.1.ebuild
index eaa6e69..43edbbb 100644
--- a/sci-biology/transdecoder/transdecoder-2.0.1.ebuild
+++ b/sci-biology/transdecoder/transdecoder-2.0.1.ebuild
@@ -15,7 +15,7 @@ SLOT="0"
 KEYWORDS=""
 IUSE=""
 
-DEPEND="sci-biology/hmmer
+DEPEND="
        sci-biology/cd-hit
        sci-biology/parafly
        sci-biology/ffindex"
@@ -48,3 +48,10 @@ src_install(){
        einfo "wget --mirror -nH -nd 
http://downloads.sourceforge.net/project/transdecoder/Pfam-AB.hmm.bin";
        einfo "hmmpress Pfam-AB.hmm.bin"
 }
+
+pkg_postinst(){
+       einfo "It is recommended to use TransDecoder with hmmer-3 or at least 
NCBI blast"
+       einfo "from either sci-biology/ncbi-blast+ (released more often) or"
+       einfo "from sci-biology/ncbi-toolkit++ (huge bundle with releases and 
less frequent bugfixes)"
+       einfo "Author says the minimum requirement is sci-biology/cd-hit"
+}