[gentoo-commits] proj/sci:master commit in: sci-biology/kmergenie/

[Martin Mokrejs]

commit:     72636efc7346f744696721df0c86bbb01273864b
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Mar 18 13:04:47 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Mar 18 13:04:47 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=72636efc

install the real binary, add dependency of external python module; the DEPEND 
line still needs a fix: DEPEND: Invalid atom (Invalid use dep: ''), token 1

Package-Manager: portage-2.2.15

 sci-biology/kmergenie/ChangeLog               | 5 +++++
 sci-biology/kmergenie/kmergenie-1.6950.ebuild | 7 +++++--
 2 files changed, 10 insertions(+), 2 deletions(-)

diff --git a/sci-biology/kmergenie/ChangeLog b/sci-biology/kmergenie/ChangeLog
index 482c032..93a1fa9 100644
--- a/sci-biology/kmergenie/ChangeLog
+++ b/sci-biology/kmergenie/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  18 Mar 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>
+  kmergenie-1.6950.ebuild:
+  install the real binary, add dependency of external python module; the DEPEND
+  line still needs a fix: DEPEND: Invalid atom (Invalid use dep: ''), token 1
+
 *kmergenie-1.6950 (13 Mar 2015)
 
   13 Mar 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>

diff --git a/sci-biology/kmergenie/kmergenie-1.6950.ebuild 
b/sci-biology/kmergenie/kmergenie-1.6950.ebuild
index 91abe45..46f37da 100644
--- a/sci-biology/kmergenie/kmergenie-1.6950.ebuild
+++ b/sci-biology/kmergenie/kmergenie-1.6950.ebuild
@@ -17,7 +17,9 @@ SLOT="0"
 KEYWORDS="~amd64"
 IUSE=""
 
-DEPEND="dev-lang/R"
+# dev-python/docopt[${PYTHON_USEDEP}]
+DEPEND="dev-python/docopt
+       dev-lang/R"
 RDEPEND="${DEPEND}"
 
 # Type `make` in the KmerGenie directory
@@ -27,6 +29,7 @@ RDEPEND="${DEPEND}"
 
 src_prepare(){
        sed -e 's#-O4##' -i makefile || die
+       sed -e 's#third_party.##' -i kmergenie || die
 }
 
 src_compile(){
@@ -34,7 +37,7 @@ src_compile(){
 }
 
 src_install(){
-       dobin kmergenie
+       dobin kmergenie specialk
        dodoc README
        # TODO: install also the python files
 }