commit: baa9423fdf3d8a4f7878952c7e62f110a7cdb2be Author: Michael Mair-Keimberger <mmk <AT> levelnine <DOT> at> AuthorDate: Mon May 12 08:53:05 2025 +0000 Commit: Sam James <sam <AT> gentoo <DOT> org> CommitDate: Tue May 27 08:27:36 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=baa9423f
sci-biology/biopython: remove unused patch(es) Signed-off-by: Michael Mair-Keimberger <mmk <AT> levelnine.at> Part-of: https://github.com/gentoo/gentoo/pull/42046 Closes: https://github.com/gentoo/gentoo/pull/42046 Signed-off-by: Sam James <sam <AT> gentoo.org> .../files/biopython-1.81-python3.12.patch | 11 -------- .../files/biopython-1.81-reportlab4.patch | 29 ---------------------- 2 files changed, 40 deletions(-) diff --git a/sci-biology/biopython/files/biopython-1.81-python3.12.patch b/sci-biology/biopython/files/biopython-1.81-python3.12.patch deleted file mode 100644 index 8f903a4a39bd..000000000000 --- a/sci-biology/biopython/files/biopython-1.81-python3.12.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- a/Tests/test_Entrez.orig.py 2023-02-13 04:07:42.000000000 +0100 -+++ b/Tests/test_Entrez.py 2023-06-30 14:42:58.177365639 +0200 -@@ -126,7 +126,7 @@ - :type params: dict - :param expected: Expected set of IDs, as colleciton of strings. - """ -- testcase.assertEquals(len(params["id"]), 1) -+ testcase.assertEqual(len(params["id"]), 1) - ids_str = params["id"][0] - # Compare up to ordering - testcase.assertCountEqual(ids_str.split(","), expected) diff --git a/sci-biology/biopython/files/biopython-1.81-reportlab4.patch b/sci-biology/biopython/files/biopython-1.81-reportlab4.patch deleted file mode 100644 index ef1994553614..000000000000 --- a/sci-biology/biopython/files/biopython-1.81-reportlab4.patch +++ /dev/null @@ -1,29 +0,0 @@ -From 74fdf49ade95157c3c4b23a95831925be4899223 Mon Sep 17 00:00:00 2001 -From: Peter Cock <[email protected]> -Date: Mon, 5 Jun 2023 12:39:59 +0100 -Subject: [PATCH] Skip if ReportLab bitmap output module missing - -Would like to skip this earlier, but not so -easy in ReportLab v4 with a choice of backends ---- - Tests/test_GraphicsBitmaps.py | 5 ++++- - 1 file changed, 4 insertions(+), 1 deletion(-) - -diff --git a/Tests/test_GraphicsBitmaps.py b/Tests/test_GraphicsBitmaps.py -index 2ffdfb3dd71..76615a2fd1d 100644 ---- a/Tests/test_GraphicsBitmaps.py -+++ b/Tests/test_GraphicsBitmaps.py -@@ -111,9 +111,12 @@ def real_test(): - "Check the fonts needed by ReportLab if you want " - "bitmaps from Bio.Graphics\n" + str(err) - ) from None -+ elif str(err).startswith("cannot import desired renderPM backend rlPyCairo"): -+ raise MissingExternalDependencyError( -+ "Reportlab module rlPyCairo unavailable\n" + str(err) -+ ) from None - else: - raise -- - return True - -
