commit: aa34c5e1502a28fc8fb1e3c78fcbeae48269ff84 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Sun May 18 08:27:44 2025 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Sun May 18 08:27:44 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aa34c5e1
sci-biology/bamtools: add 2.5.3 Signed-off-by: David Seifert <soap <AT> gentoo.org> sci-biology/bamtools/Manifest | 1 + sci-biology/bamtools/bamtools-2.5.3.ebuild | 33 ++++++++++++++++++++++++++++++ 2 files changed, 34 insertions(+) diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest index 5076fcaf1834..4fac261c0913 100644 --- a/sci-biology/bamtools/Manifest +++ b/sci-biology/bamtools/Manifest @@ -1 +1,2 @@ DIST bamtools-2.5.2.tar.gz 245729 BLAKE2B 5034ea1ec16b205488e421461ed74d8a98eae87eb7fc061e5928ad15512497a5338c9dbacbde51009c940acd55c25fccc2f3be2840d2821a8755a2a0b0370944 SHA512 540a4664abfbd1304600c17d47424c312a46e4238b0f0868f4037ddcc54c4487424e3d7820153084b3b512be8a4603e3ec5377a73311a617061460de1bfe49ef +DIST bamtools-2.5.3.tar.gz 245648 BLAKE2B f387dd1dbae87ba22e811f81afd144d1c0fab02cd3c61f0442a3383a4f91d019a3ec8f0765e8d2ab8727bb9f1b3b22f4a2aff424a7c0aaa93396eb7afe0e9ba7 SHA512 bde9d98048d9f30d7f3c4e75db97e610ab58148dedadd09a36ad2421a6357b24510abda2451452d1fb9b40e22e1b8fe6f4e4c6ee1c529c426055a050a24b52d8 diff --git a/sci-biology/bamtools/bamtools-2.5.3.ebuild b/sci-biology/bamtools/bamtools-2.5.3.ebuild new file mode 100644 index 000000000000..7a9dd5b7532d --- /dev/null +++ b/sci-biology/bamtools/bamtools-2.5.3.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2025 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit cmake + +DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files" +HOMEPAGE="https://github.com/pezmaster31/bamtools"; + +if [[ ${PV} == *9999 ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/pezmaster31/bamtools.git"; +else + SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64 ~x86" +fi + +LICENSE="MIT" +SLOT="0/${PV}" # no stable ABI yet + +RDEPEND=" + >=dev-libs/jsoncpp-1.8.0:= + sys-libs/zlib:=" +DEPEND="${RDEPEND}" +BDEPEND="virtual/pkgconfig" + +src_prepare() { + # delete bundled libs, just to be safe + rm -rf src/third_party/{gtest-1.6.0,jsoncpp} || die + + cmake_src_prepare +}
