commit: 8218b1d552d1fdf9da9088dea259d00aceae3b80 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Mon Mar 10 15:29:58 2025 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Mon Mar 10 15:29:58 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8218b1d5
dev-lang/R: drop 4.3.1-r1, 4.3.2-r1 Signed-off-by: David Seifert <soap <AT> gentoo.org> dev-lang/R/Manifest | 2 - dev-lang/R/R-4.3.1-r1.ebuild | 246 ------------------------------------------- dev-lang/R/R-4.3.2-r1.ebuild | 246 ------------------------------------------- 3 files changed, 494 deletions(-) diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest index 7952bb77f3f9..04796ebf673d 100644 --- a/dev-lang/R/Manifest +++ b/dev-lang/R/Manifest @@ -1,5 +1,3 @@ -DIST R-4.3.1.tar.gz 34899964 BLAKE2B 7aaacad01ce59e2faa46c4b830c10d2df8e4a3a1d4f11cf2aa622ceb53876f1e702dff94a820ca954ec29f53d58fa7e135ef15e8257602c50f2642b0a0c0a86a SHA512 f571c378dbdd675e267ef4419bb1141198924dadc08297c93c8dff58504994604918b3e045bb7139ba473972a063a68ed1c7426f37d4e8208b79358561d34d77 -DIST R-4.3.2.tar.gz 35039225 BLAKE2B 2de3af9013c8648c118a1efe673b618aef84a694c6865657faef5b0ca5f780ef5273bb00b607f587219ee30a11f01ccc3b730b9124847242b9d9550de471f58c SHA512 125114357f20d4a3248aee86727768d1dc15e07e44353f8a68fe2ef1fedae508e85d944301d00c0edd61e8b012b0b3cdcde53ac60be903713f96542d83ad5b1d DIST R-4.4.1.tar.gz 37353459 BLAKE2B 2c44fcab719cc2a2cef4566fd4e6c22386f02827a41045ffa074ca2a6883089275354644bce47c9978ef5c96e7b9b21576e946500746c27dc00946ef3cde4fce SHA512 cc30172227b7d89a9d6e9d65c8622b2042bcbbf3f1b5e36c7460f60958a1a0589980a1867ec9989df2589c1618233f3382d4732700b147361ace3be6680b5643 DIST R-4.4.2.tar.gz 37582785 BLAKE2B bda7e3d49c63095830d12d77bb91946c2e7b657895f3388b892ca29091dc6c23b42a6b7822910d6889f69715c3ad58f8031ab7a811f34efe0b352232e5135175 SHA512 b29d82242f70487f52849a5726610c03dffa4e54f1a32a9f3f76784fcf61f91d5c40cddee1029eeb9c9837ff26f382f348e8518dd68c84e9fc2192b981013d9a DIST R-4.4.3.tar.gz 40234425 BLAKE2B 2a7efdf1841c7bae66a0e8aef07b9e79dec9d2f1b4c32f12640eaf84f99b05ca2846eaf10a5d03e0a7fb6d0a4f00ab16cd84a618ebef7bec29c31bc04458f0db SHA512 2a1d1e5ee2e18c928e2b3e58df372083b4bbd0822863a8441404999209035436e236c8ffe3970827fbf3d765157365800ebb0bb46f361c6abe473ddec30be06f diff --git a/dev-lang/R/R-4.3.1-r1.ebuild b/dev-lang/R/R-4.3.1-r1.ebuild deleted file mode 100644 index 4a5751c35f33..000000000000 --- a/dev-lang/R/R-4.3.1-r1.ebuild +++ /dev/null @@ -1,246 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs - -# latest git commit for R bash completion: -# https://github.com/deepayan/rcompletion -BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6 - -DESCRIPTION="Language and environment for statistical computing and graphics" -HOMEPAGE="https://www.r-project.org/"; -SRC_URI=" - https://cran.r-project.org/src/base/R-4/${P}.tar.gz - https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion" - -LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" -SLOT="0" -KEYWORDS="amd64 arm64 ~hppa ~loong sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos" -IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X" - -REQUIRED_USE=" - png? ( || ( cairo X ) ) - jpeg? ( || ( cairo X ) ) - tiff? ( || ( cairo X ) )" -RESTRICT=" - minimal? ( test ) - !test? ( test )" - -# At least one package installation in the test suite requires TeX, -# and will fail without it (bug #718056). -DEPEND=" - app-arch/bzip2 - app-arch/xz-utils - app-text/ghostscript-gpl - dev-libs/libpcre2:= - >=dev-libs/tre-0.8.0_p20210321[approx] - net-misc/curl - virtual/blas - sys-libs/zlib[minizip] - sys-apps/coreutils - cairo? ( - x11-libs/cairo:=[X=] - x11-libs/pango:= - ) - icu? ( dev-libs/icu:= ) - jpeg? ( media-libs/libjpeg-turbo:= ) - kernel_linux? ( net-libs/libtirpc ) - lapack? ( virtual/lapack ) - perl? ( dev-lang/perl ) - png? ( media-libs/libpng:= ) - readline? ( sys-libs/readline:= ) - tiff? ( media-libs/tiff:= ) - tk? ( dev-lang/tk:= ) - X? ( - x11-libs/libXmu - x11-libs/libXt - )" -RDEPEND="${DEPEND} - java? ( >=virtual/jre-1.8:* )" -BDEPEND=" - sys-apps/which - virtual/pkgconfig - doc? ( - virtual/latex-base - dev-texlive/texlive-fontsrecommended - ) - test? ( virtual/latex-base )" - -PATCHES=( - "${FILESDIR}"/R-4.3.0-parallel.patch - "${FILESDIR}"/R-4.3.0-no-LDFLAGS-in-libR-pkg-config.patch - "${FILESDIR}"/R-4.3.0-no-gzip-doc.patch -) - -# false positive, the linking step fails (as it should) -QA_CONFIG_IMPL_DECL_SKIP=( iconvlist ) - -pkg_pretend() { - [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp -} - -pkg_setup() { - if [[ ${MERGE_TYPE} != binary ]] && use openmp; then - tc-check-openmp - FORTRAN_NEED_OPENMP=1 - fi - - fortran-2_pkg_setup - - # avoid using existing R installation - unset R_HOME -} - -src_prepare() { - default - - # fix packages.html for doc (gentoo bug #205103) - sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ - -i src/library/tools/R/Rd.R || die - - # fix Rscript path when installed (gentoo bug #221061) - sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \ - -i src/unix/Makefile.in || die "sed unix Makefile failed" - - # fix HTML links to manual (gentoo bug #273957) - sed -e 's:\.\./manual/:manual/:g' \ - -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" - - use lapack && - export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" - - use perl && - export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" - - # don't search /usr/local - sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die - - # Fix for Darwin (macOS) - if use prefix; then - if [[ ${CHOST} == *-darwin* ]] ; then - sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ - -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ - -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ - -e "/SHLIB_EXT/s/\.so/.dylib/" \ - -i configure.ac || die - # sort of "undo" 2.14.1-rmath-shared.patch - sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \ - -i src/nmath/standalone/Makefile.in || die - else - append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib" - fi - fi - - AT_M4DIR=m4 eautoreconf -} - -src_configure() { - filter-ldflags -Wl,-Bdirect -Bdirect - - econf \ - --enable-byte-compiled-packages \ - --enable-R-shlib \ - --disable-R-framework \ - --disable-R-static-lib \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ - rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ - --with-system-tre \ - --without-aqua \ - $(use_enable java) \ - $(use_enable lto lto R) \ - $(use_enable nls) \ - $(use_enable openmp) \ - $(use_enable profile R-profiling) \ - $(use_enable profile memory-profiling) \ - $(use_with cairo) \ - $(use_with icu ICU) \ - $(use_with jpeg jpeglib) \ - $(use_with lapack) \ - $(use_with !minimal recommended-packages) \ - $(use_with png libpng) \ - $(use_with readline) \ - $(use_with tiff libtiff) \ - $(use_with tk tcltk) \ - $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \ - $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \ - $(use_with X x) -} - -src_compile() { - export VARTEXFONTS="${T}"/fonts - emake AR="$(tc-getAR)" - emake -C src/nmath/standalone shared AR="$(tc-getAR)" - use doc && emake info pdf -} - -src_install() { - default - emake -C src/nmath/standalone DESTDIR="${D}" install - - if use doc; then - emake DESTDIR="${D}" install-info install-pdf - dosym ../manual /usr/share/doc/${PF}/html/manual - fi - - newenvd - 99R <<-_EOF_ - LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib" - R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}" - _EOF_ - - newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN} - # The buildsystem has a different understanding of install_names than - # we require. Since it builds modules like shared objects (wrong), many - # objects (all modules) get an incorrect install_name. Fixing the build - # system here is not really trivial. - if [[ ${CHOST} == *-darwin* ]] ; then - local mod - pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die - for mod in $(find . -name "*.dylib") ; do - mod=${mod#./} - install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}" - done - popd >/dev/null || die - fi - - # Users are encouraged to access some of the the R documentation - # interactively, through functions like "contributors()" that - # tries to open the "AUTHORS" file. Other files can be accessed - # by name with RShowDoc(), and the documentation for e.g. license() - # and RShowDoc() suggests a few of these names. Here we try to - # collect as many names as possible that a user might actually - # try to view through R, because if we don't decompress them, - # then R doesn't know what to do with 'em. Bug #556706. - local INTERACTIVE_DOCS=( - AUTHORS - COPYING - FAQ - NEWS - THANKS - ) - - # Other data sources that are shipped as "documentation," but which - # need to be accessible via their original unmolested filenames. - local INTERACTIVE_DATA=( - BioC_mirrors.csv - CRAN_mirrors.csv - KEYWORDS.db - NEWS.rds - ) - - local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" ) - for f in "${NOCOMPRESS_DOCS[@]}"; do - docompress -x /usr/share/doc/${PF}/${f} - done - - # Finally, an extra copy of this started showing up at some point... - rm "${ED}"/usr/$(get_libdir)/R/COPYING || die -} - -pkg_postinst() { - if use java; then - einfo "Re-initializing java paths for ${P}" - R CMD javareconf - fi -} diff --git a/dev-lang/R/R-4.3.2-r1.ebuild b/dev-lang/R/R-4.3.2-r1.ebuild deleted file mode 100644 index 24fefe89c155..000000000000 --- a/dev-lang/R/R-4.3.2-r1.ebuild +++ /dev/null @@ -1,246 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs - -# latest git commit for R bash completion: -# https://github.com/deepayan/rcompletion -BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6 - -DESCRIPTION="Language and environment for statistical computing and graphics" -HOMEPAGE="https://www.r-project.org/"; -SRC_URI=" - https://cran.r-project.org/src/base/R-4/${P}.tar.gz - https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion" - -LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64 ~arm64 ~hppa ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos" -IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X" - -REQUIRED_USE=" - png? ( || ( cairo X ) ) - jpeg? ( || ( cairo X ) ) - tiff? ( || ( cairo X ) )" -RESTRICT=" - minimal? ( test ) - !test? ( test )" - -# At least one package installation in the test suite requires TeX, -# and will fail without it (bug #718056). -DEPEND=" - app-arch/bzip2 - app-arch/xz-utils - app-text/ghostscript-gpl - dev-libs/libpcre2:= - >=dev-libs/tre-0.8.0_p20210321[approx] - net-misc/curl - virtual/blas - sys-libs/zlib[minizip] - sys-apps/coreutils - cairo? ( - x11-libs/cairo:=[X=] - x11-libs/pango:= - ) - icu? ( dev-libs/icu:= ) - jpeg? ( media-libs/libjpeg-turbo:= ) - kernel_linux? ( net-libs/libtirpc ) - lapack? ( virtual/lapack ) - perl? ( dev-lang/perl ) - png? ( media-libs/libpng:= ) - readline? ( sys-libs/readline:= ) - tiff? ( media-libs/tiff:= ) - tk? ( dev-lang/tk:= ) - X? ( - x11-libs/libXmu - x11-libs/libXt - )" -RDEPEND="${DEPEND} - java? ( >=virtual/jre-1.8:* )" -BDEPEND=" - sys-apps/which - virtual/pkgconfig - doc? ( - virtual/latex-base - dev-texlive/texlive-fontsrecommended - ) - test? ( virtual/latex-base )" - -PATCHES=( - "${FILESDIR}"/R-4.3.0-parallel.patch - "${FILESDIR}"/R-4.3.0-no-LDFLAGS-in-libR-pkg-config.patch - "${FILESDIR}"/R-4.3.0-no-gzip-doc.patch -) - -# false positive, the linking step fails (as it should) -QA_CONFIG_IMPL_DECL_SKIP=( iconvlist ) - -pkg_pretend() { - [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp -} - -pkg_setup() { - if [[ ${MERGE_TYPE} != binary ]] && use openmp; then - tc-check-openmp - FORTRAN_NEED_OPENMP=1 - fi - - fortran-2_pkg_setup - - # avoid using existing R installation - unset R_HOME -} - -src_prepare() { - default - - # fix packages.html for doc (gentoo bug #205103) - sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ - -i src/library/tools/R/Rd.R || die - - # fix Rscript path when installed (gentoo bug #221061) - sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \ - -i src/unix/Makefile.in || die "sed unix Makefile failed" - - # fix HTML links to manual (gentoo bug #273957) - sed -e 's:\.\./manual/:manual/:g' \ - -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" - - use lapack && - export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" - - use perl && - export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" - - # don't search /usr/local - sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die - - # Fix for Darwin (macOS) - if use prefix; then - if [[ ${CHOST} == *-darwin* ]] ; then - sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ - -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ - -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ - -e "/SHLIB_EXT/s/\.so/.dylib/" \ - -i configure.ac || die - # sort of "undo" 2.14.1-rmath-shared.patch - sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \ - -i src/nmath/standalone/Makefile.in || die - else - append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib" - fi - fi - - AT_M4DIR=m4 eautoreconf -} - -src_configure() { - filter-ldflags -Wl,-Bdirect -Bdirect - - econf \ - --enable-byte-compiled-packages \ - --enable-R-shlib \ - --disable-R-framework \ - --disable-R-static-lib \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ - rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ - --with-system-tre \ - --without-aqua \ - $(use_enable java) \ - $(use_enable lto lto R) \ - $(use_enable nls) \ - $(use_enable openmp) \ - $(use_enable profile R-profiling) \ - $(use_enable profile memory-profiling) \ - $(use_with cairo) \ - $(use_with icu ICU) \ - $(use_with jpeg jpeglib) \ - $(use_with lapack) \ - $(use_with !minimal recommended-packages) \ - $(use_with png libpng) \ - $(use_with readline) \ - $(use_with tiff libtiff) \ - $(use_with tk tcltk) \ - $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \ - $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \ - $(use_with X x) -} - -src_compile() { - export VARTEXFONTS="${T}"/fonts - emake AR="$(tc-getAR)" - emake -C src/nmath/standalone shared AR="$(tc-getAR)" - use doc && emake info pdf -} - -src_install() { - default - emake -C src/nmath/standalone DESTDIR="${D}" install - - if use doc; then - emake DESTDIR="${D}" install-info install-pdf - dosym ../manual /usr/share/doc/${PF}/html/manual - fi - - newenvd - 99R <<-_EOF_ - LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib" - R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}" - _EOF_ - - newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN} - # The buildsystem has a different understanding of install_names than - # we require. Since it builds modules like shared objects (wrong), many - # objects (all modules) get an incorrect install_name. Fixing the build - # system here is not really trivial. - if [[ ${CHOST} == *-darwin* ]] ; then - local mod - pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die - for mod in $(find . -name "*.dylib") ; do - mod=${mod#./} - install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}" - done - popd >/dev/null || die - fi - - # Users are encouraged to access some of the the R documentation - # interactively, through functions like "contributors()" that - # tries to open the "AUTHORS" file. Other files can be accessed - # by name with RShowDoc(), and the documentation for e.g. license() - # and RShowDoc() suggests a few of these names. Here we try to - # collect as many names as possible that a user might actually - # try to view through R, because if we don't decompress them, - # then R doesn't know what to do with 'em. Bug #556706. - local INTERACTIVE_DOCS=( - AUTHORS - COPYING - FAQ - NEWS - THANKS - ) - - # Other data sources that are shipped as "documentation," but which - # need to be accessible via their original unmolested filenames. - local INTERACTIVE_DATA=( - BioC_mirrors.csv - CRAN_mirrors.csv - KEYWORDS.db - NEWS.rds - ) - - local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" ) - for f in "${NOCOMPRESS_DOCS[@]}"; do - docompress -x /usr/share/doc/${PF}/${f} - done - - # Finally, an extra copy of this started showing up at some point... - rm "${ED}"/usr/$(get_libdir)/R/COPYING || die -} - -pkg_postinst() { - if use java; then - einfo "Re-initializing java paths for ${P}" - R CMD javareconf - fi -}
