commit: bcb9a5d452923bb22ec34d016db972ccb31b080f Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Mar 5 19:58:57 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Mar 5 19:58:57 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=bcb9a5d4
new package Package-Manager: portage-2.2.15 sci-biology/pairagon/ChangeLog | 9 +++++++ sci-biology/pairagon/metadata.xml | 9 +++++++ sci-biology/pairagon/pairagon-1.1.ebuild | 42 ++++++++++++++++++++++++++++++++ 3 files changed, 60 insertions(+) diff --git a/sci-biology/pairagon/ChangeLog b/sci-biology/pairagon/ChangeLog new file mode 100644 index 0000000..b7c1ceb --- /dev/null +++ b/sci-biology/pairagon/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/pairagon +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*pairagon-1.1 (05 Mar 2015) + + 05 Mar 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> +metadata.xml, + +pairagon-1.1.ebuild: + new package diff --git a/sci-biology/pairagon/metadata.xml b/sci-biology/pairagon/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/pairagon/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/pairagon/pairagon-1.1.ebuild b/sci-biology/pairagon/pairagon-1.1.ebuild new file mode 100644 index 0000000..bceba33 --- /dev/null +++ b/sci-biology/pairagon/pairagon-1.1.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="HMM-based cDNA to genome aligner" +HOMEPAGE="http://mblab.wustl.edu/software.html"; +SRC_URI="http://mblab.wustl.edu/software/download/pairagon_.tar"; + +LICENSE="BSD-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="dev-lang/perl" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/pairagon + +src_prepare(){ + sed -e 's:src/get-glib-flags.sh:#src/get-glib-flags.sh:; s:-Wall -Werror::' -i Makefile +} + +src_compile(){ + emake pairagon-linux +} + +src_install(){ + # emake DESTDIR="${D}"/usr install + dobin bin/* + dodoc README + insinto /usr/share/pairagon + doins parameters/* + eval `perl '-V:installvendorlib'` + vendor_lib_install_dir="${installvendorlib}" + dodir ${vendor_lib_install_dir}/pairagon + insinto ${vendor_lib_install_dir}/pairagon + doins lib/perl5/Alignment.pm + echo "PERL5LIB="${vendor_lib_install_dir}"/pairagon" > ${S}"/99pairagon" + doenvd ${S}"/99pairagon" || die +}
