jlec 14/03/23 15:29:13 Modified: ChangeLog Added: samtools-0.1.19-r2.ebuild Removed: samtools-0.1.19-r1.ebuild Log: sci-biology/samtools: Fix symlink creation, thanks Martin Mokrejs telling me that (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.17 sci-biology/samtools/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/ChangeLog?rev=1.17&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/ChangeLog?rev=1.17&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/ChangeLog?r1=1.16&r2=1.17 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v retrieving revision 1.16 retrieving revision 1.17 diff -u -r1.16 -r1.17 --- ChangeLog 11 Feb 2014 20:17:25 -0000 1.16 +++ ChangeLog 23 Mar 2014 15:29:13 -0000 1.17 @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/samtools # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.16 2014/02/11 20:17:25 grobian Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.17 2014/03/23 15:29:13 jlec Exp $ + +*samtools-0.1.19-r2 (23 Mar 2014) + + 23 Mar 2014; Justin Lecher <[email protected]> -samtools-0.1.19-r1.ebuild, + +samtools-0.1.19-r2.ebuild: + Fix symlink creation, thanks Martin Mokrejs telling me that 11 Feb 2014; Fabian Groffen <[email protected]> samtools-0.1.19-r1.ebuild: Reference correct library name on Darwin, thanks Linlin Yan in bug #491812 1.1 sci-biology/samtools/samtools-0.1.19-r2.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/samtools-0.1.19-r2.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/samtools-0.1.19-r2.ebuild?rev=1.1&content-type=text/plain Index: samtools-0.1.19-r2.ebuild =================================================================== # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-0.1.19-r2.ebuild,v 1.1 2014/03/23 15:29:13 jlec Exp $ EAPI=5 PYTHON_COMPAT=( python{2_6,2_7} ) inherit eutils multilib python-r1 toolchain-funcs DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments" HOMEPAGE="http://samtools.sourceforge.net/"; SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" LICENSE="MIT" SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" IUSE="examples" REQUIRED_USE="${PYTHON_REQUIRED_USE}" CDEPEND="sys-libs/ncurses" RDEPEND="${CDEPEND} dev-lang/lua dev-lang/perl" DEPEND="${CDEPEND} virtual/pkgconfig" src_prepare() { epatch "${FILESDIR}"/${P}-buildsystem.patch sed -i 's~/software/bin/python~/usr/bin/env python~' "${S}"/misc/varfilter.py || die tc-export CC AR } src_compile() { local _ncurses="$(pkg-config --libs ncurses)" emake dylib LIBCURSES="${_ncurses}" emake LIBCURSES="${_ncurses}" } src_install() { dobin samtools $(find bcftools misc -type f -executable) python_replicate_script "${ED}"/usr/bin/varfilter.py dolib.so libbam$(get_libname 1) dosym libbam$(get_libname 1) /usr/$(get_libdir)/libbam$(get_libname) insinto /usr/include/bam doins *.h doman ${PN}.1 dodoc AUTHORS NEWS if use examples; then insinto /usr/share/${PN} doins -r examples fi }
