For starters: Lucene:
http://gmod.org/wiki/Lucegene/ I also know of several big Pharma companies using it, but can't say names. You can likely guess, as they are instantly recognizable global brands. TREC Genomics focused on info retrieval on genome data. Lucene is used by NIST to setup the relevance pool, etc. I know many people that use it to search PubMed and the like and then correlate it with outputs from internal documents/experiments/etc. Hadoop One I saw: http://www.slideshare.net/cloudera/hw09-hadoop-for-bioinfomatics I'm sure others in the Hadoop community can name some more. I recall seeing some others go by my radar, but don't see URLs. These days, when your talking TBs of data for a single sequencing run (or others), you need large scale data crunching capabilities Mahout I'd ask on mahout-u...@lucene.a.o. Nothing comes to mind, but we have a lot of lurkers there, so it might hit home. Mahout is a very likely candidate for this kind of work. Some basic searching for "Lucene genetics", etc. will lead you to a good deal of results. HTH, Grant On Mar 10, 2010, at 10:35 AM, Mattmann, Chris A (388J) wrote: > Hey Grant, > > Here here on that. Some of the same systems we use OODT on use Lucene as > well, I'd be happy to provide some feedback, let me know. > > Cheers, > Chris > > > > On 3/10/10 7:18 AM, "Grant Ingersoll" <gsing...@apache.org> wrote: > > Lucene is used in a number of places for bio-informatics. Hadoop as well and > I've heard rumors of Mahout as well. I can send pointers here or offline and > also have some contacts if you'd like. > > -Grant > > On Mar 10, 2010, at 4:55 AM, Ross Gardler wrote: > >> I've been invited to keynote at the Open bio-informatics conference in July, >> wearing my ASF hat. their invite said: >> >> Is anyone here using ASF software in this space? >> >> Ross > > > > --------------------------------------------------------------------- > To unsubscribe, e-mail: general-unsubscr...@incubator.apache.org > For additional commands, e-mail: general-h...@incubator.apache.org > --------------------------------------------------------------------- To unsubscribe, e-mail: general-unsubscr...@incubator.apache.org For additional commands, e-mail: general-h...@incubator.apache.org
