Hi,

Have a look at this question 
https://gis.stackexchange.com/questions/383825/difference-between-qgis-export-and-gdalwarp?

The original poster managed to get good output with gdalwarp by warping first 
into EPSG:9040 and then into EPSG:4326 but that feels like a workaround and not 
a solution. I could reproduce the issue and I wonder what QGIS is doing 
differently.

-Jukka Rahkonen-
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