External Email - Use Caution
Hello,
'timepoints' refers to the individual scan sessions that make up a longitudinal
dataset for a subject.
i.e. If a subject was scanned 3 times, say in 2010, 2015, and 2020, this
subject would have 3 timepoints. One from each year they were scanned.
Best,
Jackson
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Atwater, Emanuel R
<emanuel.r.atwa...@uth.tmc.edu>
Sent: Thursday, July 27, 2023 6:15 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] (no subject)
External Email - Use Caution
Hello FreeSurfer Team,
I recently messaged about running a longitudinal scan on a couple of images.
The response told me to utilize “timepoints”:
For base processing, specify each timepoint with -tp <> (not the nii file).
recon-all -base <templateid> -tp <tp1id> -tp <tp2id> ... -all
I’ve attempted to review the youtube videos and instructions made available
online but am unsure what “timepoints” are. Can I have some clarification on
what exactly a timepoint is, please.
FS version: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b
Recon-all.log: see attached
V/r,
Emanuel Atwater
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