Any chance that part of the left CST is truncated in this one subject? E.g., if
the top part of the brain was outside the field of view?
Anastasia.
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Salar Dini, Elaheh
<elaheh.salard...@yale.edu>
Sent: Wednesday, June 29, 2022 11:38 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] trac-all -prep -c ERROR
External Email - Use Caution
Dear experts,
I am running TRACULA for 90 subjects. Exceptionally, for one of the subjects, I
get the following error in -prep step:
((INFO: Distances between consecutive points in test subject's space are 10 13
12 13 13 12
WARN: Could not find satisfactory control point fit - try 17034
Writing output files to
/home2/am2359/fs6_data/TRACULA/subjects_dir/47/dlabel/syn/lh.cst_avg16_syn_bbr_*
Writing spline volume to
/home2/am2359/fs6_data/TRACULA/subjects_dir/47/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_7.nii.gz
Segmentation fault (core dumped)
Linux tauruspet.med.yale.edu 3.10.0-693.el7.x86_64 #1 SMP Tue Aug 22 21:09:27
UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS at Wed Jun 29 10:31:11 EDT 2022))
I am attaching the log file as well: MailScanner has detected a possible fraud
attempt from "secure-web.cisco.com" claiming to be
https://drive.google.com/file/d/1pgEmkMtk4UoELpGR2bU_Vac-2BDr-eNy/view?usp=sharing<https://secure-web.cisco.com/1SmnY7WYnV1XRZV1hzFK0-fljtz5hTgSEDuVurOZOZqB22zXjeNXjwoJmMg8m0rebhhkBgEG85lX60uQdweaszlFaJK0aAf6k-tDqRHPeCrz3HbLV22IVyX0RGrImMTcUBc_63gMzWjWK9eyH69Bjr8g1UyxZXFkNJ3OsWaVuwX97x0BWhtcbbrQ_LY-JCZgpxP_XA6lSuz7dbq1KXKfR7hYJkRBpmu-dwHdY2yz8QubiCBLB8q20-RD8dv0uLOM-aXyamfQOU9KFfOAuT1t9aehuseGannHIdY4Fq30y2JAnFZ42owKAg-cUAjR6_wDxWve_BGI77yzfLgDi7CusPY_0vml2btWwy8N3p1xjaHs/https%3A%2F%2Fdrive.google.com%2Ffile%2Fd%2F1pgEmkMtk4UoELpGR2bU_Vac-2BDr-eNy%2Fview%3Fusp%3Dsharing>
On a quick look, aparc+aseg seems to be properly done. Will you please help me
to troubleshoot this if possible?
Thank you,
Ela
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