have you double checked the orientation of the data in freeview? Eg, is
the axial view in freeview truly showing you the axial view of the brain?
On 10/18/2021 11:39 AM, Sarkis, Rani A.,M.D.,M.SC. wrote:
Hello all,
I have an issue with a study, and am wondering whether it can be fixed.
Freesurfer version:
freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c
I am getting a bad talairach output message and when I try to address
it with tkregister2 it seems that the orientations are off with
coronal sections being treated as sagittal.
I assume there is an issue with acquisition. The raw data through
freeview looks Ok.
all the best,
rani
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