External Email - Use Caution To whom it may concern,
I am trying to run hippocampal and amygdala segmentation (https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala) on FreeSurfer v6.0 (freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c). I was able to run recon-all, however I am unable to run segmentHA_T1.sh because the command doesn't exist in $FREESURFER_HOME/bin. Instead, there is segmentSF_T1.sh. I've tried searching the email listings for information comparing the two scripts, but haven't been able to find much. In order to run the hippocampal and amygdala segmentation, am I able to use segmentSF_T1.sh instead of segmentHA_T1.sh? Is there a more recent version of Freesurfer I have to install that includes segmentHA_T1.sh? Thank you in advance for the help. Best, CC ---------------------------------------------------------------------- Disclaimer: The materials in this e-mail are private and may contain Protected Information. Please note that e-mail communication is not encrypted by default. You have the right to request further emails be encrypted by notifying the sender. Your continued use of e-mail constitutes your acknowledgment of these confidentiality and security limitations. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution, or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this e-mail in error, please immediately notify the sender via telephone or return e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
