Yes, that should work. You can create a mask by breaking the annotation into labels (mri_annotation2label), then converting the label into a binary mask (mri_label2label with --mask option), then mri_binarize --i lh.thickness --mask youmask.mgh --o lh.thickness.masked.mgh
On 07/30/2018 01:47 AM, N Saf wrote: > > External Email - Use Caution > > Dear Freesurfer Experts, > > I wonder how can I show the cortical thickness surface on just one > region of my interest in Freeview. assume that I want to see the > thickness surface of one of the regions in DKTatlas. does it work if I > make a binary mask of that specific region on aparcDKTatlas.annot and > then multiply it to the ?h.thickness surface ?? any help will be > appreciated. > > Best Regards, > Nazanin > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
