Yes, I think so
On 05/07/2018 10:35 PM, Alexopoulos, Dimitrios wrote: > External Email - Use Caution > > I ran 'recon-all -all -hires -qcache' on several datasets. I made numerous > edits of the brainmansk.mgz (for dura removal) and added control points and > want to rerun with the changes. > > I thought I could rerun with changes using; > 'recon-all -make all' > Do I need to include the -hires and -qcache flags again when invoking the > above command with -make? > > Jim > > > “The materials in this email are private and may contain Protected Health > Information. If you are not the intended recipient, be advised that any > unauthorized use, disclosure, copying, distribution or the taking of any > action in reliance on the contents of this information is strictly > prohibited. If you have received this email in error, please immediately > notify the sender via telephone or return email.” > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N. Greve > Sent: Thursday, April 12, 2018 1:01 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] -qcache in recon-all commnd > > Right. And you'd need to redo it after all manual edits > > > On 04/12/2018 11:06 AM, Alexopoulos, Dimitrios wrote: >> Thanks. We are starting an analysis of a pediatric cohort using FS 6.0 >> and may/may not use QDEC downstream for surface-based group analysis. >> >> That said, it sounds like it is not a bad idea use –qcache other than >> more preprocessing time. >> >> Basically, same output as without -qcahe but more files created that >> may be used later for QDEC? >> >> Jim >> >> “The materials in this email are private and may contain Protected >> Health Information. If you are not the intended recipient, be advised >> that any unauthorized use, disclosure, copying, distribution or the >> taking of any action in reliance on the contents of this information >> is strictly prohibited. If you have received this email in error, >> please immediately notify the sender via telephone or return email.” >> >> *From:*freesurfer-boun...@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] *On Behalf Of *Douglas >> Greve >> *Sent:* Wednesday, April 11, 2018 10:29 PM >> *To:* freesurfer@nmr.mgh.harvard.edu >> *Subject:* Re: [Freesurfer] -qcache in recon-all commnd >> >> It is not. -qcache is a preprocessing step prior to doing group >> analysis with QDEC. If you use it, you should only do so after you >> have finished all the individual analysis (eg, manual edits) >> >> On 4/11/18 10:02 PM, Alexopoulos, Dimitrios wrote: >> >> Is it recommended to use the -qcache flag in the basic recon-all >> -all command? What does it do and what are the advantage of using it? >> >> Jim >> >> >> ---------------------------------------------------------------------- >> -- >> >> The materials in this message are private and may contain >> Protected Healthcare Information or other information of a >> sensitive nature. If you are not the intended recipient, be >> advised that any unauthorized use, disclosure, copying or the >> taking of any action in reliance on the contents of this >> information is strictly prohibited. If you have received this >> email in error, please immediately notify the sender via telephone >> or return mail. >> >> >> >> >> _______________________________________________ >> >> Freesurfer mailing list >> >> Freesurfer@nmr.mgh.harvard.edu >> <mailto:Freesurfer@nmr.mgh.harvard.edu> >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> ---------------------------------------------------------------------- >> -- >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If >> you are not the intended recipient, be advised that any unauthorized >> use, disclosure, copying or the taking of any action in reliance on >> the contents of this information is strictly prohibited. If you have >> received this email in error, please immediately notify the sender via >> telephone or return mail. >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at http://www.partners.org/complianceline . If the e-mail was sent to you in > error but does not contain patient information, please contact the sender and > properly dispose of the e-mail. > > > ________________________________ > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
