This is not an easy thing to do. The script to do it is 
make_folding_atlas with the --xhemi flag. RunĀ  it with --help to get 
more info


On 02/13/2018 11:49 AM, Ting Qi wrote:
> Dear Freesurfer experts,
>
> I am writing to ask how to do the surface-based inter-hemispheric 
> registration based on the customised template, instead of fsaverage.
>
> I am planning to calculate the lateralisation index for each vertex, which 
> means I should to use the symmetry template, for example, fsaverage_sym. 
> However, the current issue is my participants are children. Therefore it 
> would be better to put the individual data to the customised average 
> template, which is already created by ANTS in my case. So I was wondering how 
> to perform the symmetry registration on this created template?
>
> Thank you in advance.
>
> Cheers,
> Ting
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> Freesurfer@nmr.mgh.harvard.edu
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>
>

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MGH-NMR Center
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