Hi Eva, I believe this should be fixed in the most recent El Capitan dev version. Let me know if the issue persists.
best Andrew On February 1, 2018 at 7:02:19 AM, Iglesias Gonzalez, Eugenio (e.igles...@ucl.ac.uk<mailto:e.igles...@ucl.ac.uk>) wrote: We are looking into all this. We’ll have updates soon. Cheers, /Eugenio -- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Eva Hilland <evahill...@gmail.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Wednesday, 31 January 2018 at 22:26 To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] segmentHA_T2.sh Dear freesurfer experts, I have tried the dev version of Segmentation of hippocampal subfields and nuclei of the amygdala for OSX el Capitan, downloaded today. I did get an error message similar to a previous error I found on this mailing list: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2017-November/054973.html<https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2017-November/054973.html> I have pasted the hippocampal-subfields-T2.HippoAMYT1andT2.log below Is this a matlab runtime problem? Many thanks in advance Eva -------------------------------------------- #@# Hippocampal Subfields processing (T1+T2) left Wed Jan 31 22:36:38 CET 2018 ------------------------------------------ Setting up environment variables --- DYLD_LIBRARY_PATH is .:/Applications/freesurfer/MCRv84//runtime/maci64:/Applications/freesurfer/MCRv84//bin/maci64:/Applications/freesurfer/MCRv84//sys/os/maci64: Invalid MEX-file '/tmp/MCR_4021793156/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64': dlopen(/tmp/MCR_4021793156/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64, 6): Symbol not found: __ZNKSt5ctypeIcE13_M_widen_initEv Referenced from: /tmp/MCR_4021793156/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64 (which was built for Mac OS X 10.11) Expected in: /usr/lib/libstdc++.6.dylib in /tmp/MCR_4021793156/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64 Error in kvlClear (line 11) Error in segmentSubjectT1T2_autoEstimateAlveusML (line 135) MATLAB:invalidMEXFile Darwin Evas-MacBook-Pro.local 15.5.0 Darwin Kernel Version 15.5.0: Tue Apr 19 18:36:36 PDT 2016; root:xnu-3248.50.21~8/RELEASE_X86_64 x86_64 T2 hippocampal subfields exited with ERRORS at Wed Jan 31 22:36:49 CET 2018
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