Technically, it does not use an anatomical volume but rather the
surfaces derived from the conformed volume (so the registration will be
good for any conformed volume). No need to reorient the functionals as
long as the header info about the head orientation is correct.
On 10/6/17 5:29 PM, Jiahe Zhang wrote:
Thanks Bruce and Doug! Follow-up questions: which anatomical volume
does bbregister register the functional to? Also, is there any need to
reorient the functional image before preprocessing?
On Tue, Sep 5, 2017 at 11:34 AM, Douglas N Greve
<gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote:
On 08/31/2017 11:47 AM, Jiahe Zhang wrote:
> Dear Freesurfer experts,
>
> I have two questions regarding preproc-sess:
>
> 1) What is the default algorithm that does the functional-anatomical
> registration? And is there any way to change the default to other
> types of registration methods?
it uses bbregister. There is no easy way to change it
>
> 2) If I do not want to normalize to template, i.e. I want to
keep the
> image in native space, should I be using -noreg or -noinorm?
Use the -per-session option and dont specify a hemisphere or mni305
>
> Thanks,
> Jiahe
>
>
> --
> Jiahe Zhang
> Ph.D. Candidate
> Department of Psychology
> Northeastern University
> 617-373-4789 <tel:617-373-4789>
>
>
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MGH-NMR Center
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Northeastern University
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