Hello Freesurfer crowd. I am working on try to get my first fMRI scan working. I have come a long ways in terms of setting things up but have reached a road block that I have unable to get past.
I have been following along the slides from the power point presentation "FSFAST Part 2". I got as far as slide #32: Preprocessing Command". Specifically, I entered the following command: preproc-sess -sf sessids -surface fsaverage lhrh -mni305 -fwhm 5 -pre-run Things started to happen but finished rather quickly. I looked through the text output and it would appear that it cannot find the bet.fsl tools(?). I looked at the directory to where it was looking at it IS in there (i.e. /usr/local/freesurfer/bin/bet.fsl) I also labelled things exactly as outlined: (i.e. /usr/local/freesurfer/subjects/handedness/project/Sess01) I have attached a couple text files from the output logs. What can I try next? [Logo] Brad J. Matushewski, M.Sc., R.Kin., CSEP-CEP. Laboratory for Brain & Heart Health School of Kinesiology Western University Room 402, Arthur & Sonia Labatt Health Sciences Building London, ON, Canada, N6A 5B9 Tel: (519) 661-2111 x 89066 Fax: (519) 850-2447
preproc-sess.Sess01.log
Description: preproc-sess.Sess01.log
preproc-Sess01-bold.log
Description: preproc-Sess01-bold.log
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