I think the ismac.m script was introduced in later versions of matlab. You can just create your own with the following content:
function y=ismac y=0; return On 02/15/2017 01:59 PM, aral ahmadi wrote: > From: Douglas N Greve > So ismac.m is not defined in your matlab implementation? What version of > matlab are you using? What kind of computer are you running on? > > Aral's answer: > I am working through VPN and connect to a Linux server using my laptop > (Thinkpad2011). Not sure which version of Matlab, this freesurfer5.3 > home directory uses, but I have matlab2010 opened on linux when I ran > LGI command. although in job output file, it shows a warning that > Matlab starting without a display, then it says <MATLAB> copyright > 1984-2005 the Mathwork. Inc, version7.1.0.183 (R14) service pack3, > Aug2,2005 > > Thanks, > Aral > > aral ahmadi wrote: > > > > Dear experts > > > > I have a question regarding Freesurfer- LGI error I got during running > > LGI after all recon steps been ran with no problem. you could see the > > error below. > > > > *reading filled volume... > > * > > > > *??? undefined function or variable 'ismac'.* > > *error in -->load_mgh at 68* > > * > > * > > *if(strcmp(computer,'MAC') || strcmp(computer,'MAC') || ismac)* > > * > > * > > *error in -->MRIread at 87* > > * > > * > > *[mri, voi, M, mr_parms, volsz] = load_mgh (fspec, [], [], headeronly);* > > * > > * > > *error in --> make outer-surface at 24* > > * > > * > > *vol = MRIread(filled_volume);* > > ** > > *>> ERROR:make _outer_surface did not creat output file > > 'net/storage1/usr2/onrc/home/p2/Aahmadi/onrc/data/Aral-july/test/subject* > > *Linux compute31 2.6.32-504.12.2.e16.*86_64 #1 SMP Wed Mar11 UTC 2015 > > 86_64 86_64 GNU/Linux* > > * > > * > > *recon-all -s S1091RPY existed with Errors at thu jan19 2017* > > * > > * > > The error is ...Undefined function or variable 'ismac' - matlab is > > expecting that variable to be defined (it's trying to detect the OS, > > whether Linux, windows/ Mac), but it isn't. * > > * > > > > I appreciate if you give me your advice on this issue. > > > > Thanks, > > > > Aral > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
