Dear Bruce, thank you for your fast reply ,I think I could not explain the problem correctly . I want the number of slices in aseg file convert from 256x256x256 to 208x176x176(the subject size) so I can enable to compute the dice coefficient with my Matlab code ? any suggestions how can I make it possible?
Best Regards, Nazanin On Mon, Jan 9, 2017 at 5:51 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Nazanin > > all our segmentations are in subject space, so it should be pretty > straightforward > > cheers > Bruce > > On Mon, 9 Jan 2017, N Saf wrote: > > Dear freesurfers, >> >> I analysis my T1 MRI with FreeSurfer (aseg.mgz 256x256x256) and I have >> manual segmentation for hippocampus in my subject space(208x176x176)as >> well. >> I want to compute the dice coefficient with one simple Matlab code. how >> can >> I do it correctly ?if I want to bring the aseg to subject space , which >> command with which options is the best way to do it correctly ?any help >> can >> be appreciated.(I did it for the FSL segmentation result but it was simple >> because the result is in my subject space). >> >> Best Regards, >> Nazanin >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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