I use    sudo chmod u+x mri_coreg, so it should can be run.

Frank Yu

On Thu, Dec 15, 2016 at 10:51 AM, Frank Robert <frabob2...@gmail.com> wrote:

>
> I download mri_coreg from this website to put it on my virtual machine
> ubuntu \local\user\freesurfer\bin directory.  But I run it and it say
>
> https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_coreg
>
> \local\user\freesurfer\bin\mri_coreg can not execute binary file?
>
> Do you know why?
>
> Thanks
>
> Frank Yu
>
>
>
> On Mon, Oct 3, 2016 at 12:24 PM, Douglas N Greve <
> gr...@nmr.mgh.harvard.edu> wrote:
>
>> you can get it from here
>>
>> https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_coreg
>>
>> On 10/03/2016 12:46 PM, Hsin-Tsung Lee wrote:
>> > Dear Dr. Bruce
>> >     I have one more question, does the "mri_coreg" available in
>> > version 5.30 stable, or it only available in v6.0(or it's beta version)?
>> >
>> > Best Regard
>> >
>> > HsinTsung Lee
>> >
>> > 2016-10-03 21:30 GMT+08:00 Bruce Fischl <fis...@nmr.mgh.harvard.edu
>> > <mailto:fis...@nmr.mgh.harvard.edu>>:
>> >
>> >     Hi HsinTsung
>> >
>> >     FreeSurfer V6 isn't out yet, but we are moving towards having a
>> >     beta. I'll leave the registration  questions for Doug
>> >     cheers
>> >     Bruce
>> >
>> >
>> >     On Mon, 3 Oct 2016, Hsin-Tsung Lee wrote:
>> >
>> >
>> >         Dear freesurfer community
>> >                I have used the freesurfer v5.30 stable on linux, I
>> >         want to fusion
>> >         the CT image and the MRI T1 image. The CT image was signed
>> >         form the epilepsy
>> >         patient after the inserted depth electrode surgery. The MR
>> >         image was sign
>> >         before the operation.
>> >                I tried to register them by the "bbregister" or
>> >         "mri_robust_register"
>> >         , but it didn't work good.
>> >         And I had seen the  website
>> >         page"https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer
>> /2016-June/046081.ht
>> >         <https://mail.nmr.mgh.harvard.edu/pipermail//
>> freesurfer/2016-June/046081.ht>
>> >         ml" , does the "mri_coreg" is the better instruction to use in
>> >         my case?
>> >
>> >         And, I found that I can't find the download link of freesurfer
>> >         v6.0 in your
>> >         website, and the link "
>> >         ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/gre
>> ve/mri_coreg.mac
>> >         <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/
>> flat/greve/mri_coreg.mac>
>> >
>> >         " is invalid to use.
>> >
>> >         I really appreciate any help here
>> >
>> >         HsinTsung Lee
>> >
>> >
>> >
>> >     _______________________________________________
>> >     Freesurfer mailing list
>> >     Freesurfer@nmr.mgh.harvard.edu <mailto:freesur...@nmr.mgh.har
>> vard.edu>
>> >     https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> >     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>> >
>> >
>> >     The information in this e-mail is intended only for the person to
>> >     whom it is
>> >     addressed. If you believe this e-mail was sent to you in error and
>> >     the e-mail
>> >     contains patient information, please contact the Partners
>> >     Compliance HelpLine at
>> >     http://www.partners.org/complianceline
>> >     <http://www.partners.org/complianceline> . If the e-mail was sent
>> >     to you in error
>> >     but does not contain patient information, please contact the
>> >     sender and properly
>> >     dispose of the e-mail.
>> >
>> >
>> >
>> >
>> > _______________________________________________
>> > Freesurfer mailing list
>> > Freesurfer@nmr.mgh.harvard.edu
>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>> --
>> Douglas N. Greve, Ph.D.
>> MGH-NMR Center
>> gr...@nmr.mgh.harvard.edu
>> Phone Number: 617-724-2358
>> Fax: 617-726-7422
>>
>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>
>> _______________________________________________
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>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>
>
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